; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006548 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006548
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionVQ domain-containing protein
Genome locationChr07:19741515..19741913
RNA-Seq ExpressionHG10006548
SyntenyHG10006548
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]2.9e-3765.52Show/hide
Query:  MEN-FTSLPNNLHHQKITKIPRKATIID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD--
        MEN  T+LP + HH+K+++   K T ID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD    FDQSV++ NH +YP  P SS P  SFD  
Subjt:  MEN-FTSLPNNLHHQKITKIPRKATIID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD--

Query:  ---ASASSHVFDPTGVV---EGRYWRGQMEGSFSGFQASSCVNIW
            SAS  V     +    EGRYWRG+MEGSFSGFQASSCVNIW
Subjt:  ---ASASSHVFDPTGVV---EGRYWRGQMEGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]7.3e-4170.21Show/hide
Query:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------
        MENFT+LP+N HH+K++++  KATI  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD   DQSV++ NHV+YP  PSS P  SFD       
Subjt:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------

Query:  SASSHV-FDP-TGVVEGRYWRGQME-GSFSGFQASSCVNIW
        SAS  V FD      EGRYWRG+ME GSFSGFQASSCVNIW
Subjt:  SASSHV-FDP-TGVVEGRYWRGQME-GSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.8e-2354.74Show/hide
Query:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----
        MEN  SLPN+L H+K+     +AT+   NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+      
Subjt:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----

Query:  ASSHVFDPTGVVEGRYWRGQMEGSFSGFQASSCVNIW
         SS  +DP  V       G+M+ S  GFQA S V++W
Subjt:  ASSHVFDPTGVVEGRYWRGQMEGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.1e-2456.2Show/hide
Query:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----
        MEN  SLPN+L H+K+     +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+      
Subjt:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----

Query:  ASSHVFDPTGVVEGRYWRGQMEGSFSGFQASSCVNIW
         SS  +DP GV       G+M+ S  GFQA S V++W
Subjt:  ASSHVFDPTGVVEGRYWRGQMEGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]7.5e-3070.8Show/hide
Query:  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFD-----ASASSHV-FDPTGVVEGRYWRGQMEGS
        +DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP D FDQS E+ N V+YP  PSS+ A SFD     ASAS  V FD         W+G+MEGS
Subjt:  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFD-----ASASSHV-FDPTGVVEGRYWRGQMEGS

Query:  FSGFQASSCVNIW
        FSGFQASSCVN W
Subjt:  FSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein3.5e-4170.21Show/hide
Query:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------
        MENFT+LP+N HH+K++++  KATI  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD   DQSV++ NHV+YP  PSS P  SFD       
Subjt:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------

Query:  SASSHV-FDP-TGVVEGRYWRGQME-GSFSGFQASSCVNIW
        SAS  V FD      EGRYWRG+ME GSFSGFQASSCVNIW
Subjt:  SASSHV-FDP-TGVVEGRYWRGQME-GSFSGFQASSCVNIW

A0A1Q3BFQ5 VQ domain-containing protein6.0e-0939.52Show/hide
Query:  NNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPF------DQSVEESNHVYYPSSPSSIPAASFDASASSHVFD
        N  HH   +   +K T + +N PIKV +ISSPM+VKA+N SEFRAIVQ+LTGQ+S  + F        + EE+N V Y  +P      + ++   S    
Subjt:  NNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPF------DQSVEESNHVYYPSSPSSIPAASFDASASSHVFD

Query:  PTGVVEGRYWRGQMEGSFSGFQAS
        P    +G  W G    SF G Q+S
Subjt:  PTGVVEGRYWRGQMEGSFSGFQAS

A0A5A7VDH6 VQ motif-containing protein1.4e-3765.52Show/hide
Query:  MEN-FTSLPNNLHHQKITKIPRKATIID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD--
        MEN  T+LP + HH+K+++   K T ID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD    FDQSV++ NH +YP  P SS P  SFD  
Subjt:  MEN-FTSLPNNLHHQKITKIPRKATIID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD--

Query:  ---ASASSHVFDPTGVV---EGRYWRGQMEGSFSGFQASSCVNIW
            SAS  V     +    EGRYWRG+MEGSFSGFQASSCVNIW
Subjt:  ---ASASSHVFDPTGVV---EGRYWRGQMEGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like4.3e-1555.05Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSV----EESNHVYYPSSPSSIPAASFDASA-SSHVFDPTGVV-EGRYWRGQMEGSFSGF
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPDD F+       EE NH +YP  PS+  A S D       V    G + EG + + +M+G FSGF
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSV----EESNHVYYPSSPSSIPAASFDASA-SSHVFDPTGVV-EGRYWRGQMEGSFSGF

Query:  QASSCVNIW
        QA SCVN +
Subjt:  QASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.0e-2456.2Show/hide
Query:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----
        MEN  SLPN+L H+K+     +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+      
Subjt:  MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----

Query:  ASSHVFDPTGVVEGRYWRGQMEGSFSGFQASSCVNIW
         SS  +DP GV       G+M+ S  GFQA S V++W
Subjt:  ASSHVFDPTGVVEGRYWRGQMEGSFSGFQASSCVNIW

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic4.3e-0432.48Show/hide
Query:  TKIP--RKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWRG
        T+IP  +K      +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D P   +   +  ++ P   S +     D       + P  + E  +   
Subjt:  TKIP--RKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWRG

Query:  QMEGSFSGFQASSCVNI
        QM    SGF +S   N+
Subjt:  QMEGSFSGFQASSCVNI

Q9LDH1 Sigma factor binding protein 1, chloroplastic2.5e-0433.06Show/hide
Query:  QKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD---DPFDQSVEESNHVYYPSSPSSIPAASFD---ASASSHVFDPTGVV
        +K  K  +K T    NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +P   S    +H   P + +  P            S  ++P    
Subjt:  QKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD---DPFDQSVEESNHVYYPSSPSSIPAASFD---ASASSHVFDPTGVV

Query:  EGRYWRGQMEGSFSGFQASSCVNI
        E  +   QM   FSGF ++   N+
Subjt:  EGRYWRGQMEGSFSGFQASSCVNI

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.1e-0532.48Show/hide
Query:  TKIP--RKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWRG
        T+IP  +K      +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D P   +   +  ++ P   S +     D       + P  + E  +   
Subjt:  TKIP--RKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWRG

Query:  QMEGSFSGFQASSCVNI
        QM    SGF +S   N+
Subjt:  QMEGSFSGFQASSCVNI

AT3G56710.1 sigma factor binding protein 11.8e-0533.06Show/hide
Query:  QKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD---DPFDQSVEESNHVYYPSSPSSIPAASFD---ASASSHVFDPTGVV
        +K  K  +K T    NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +P   S    +H   P + +  P            S  ++P    
Subjt:  QKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD---DPFDQSVEESNHVYYPSSPSSIPAASFD---ASASSHVFDPTGVV

Query:  EGRYWRGQMEGSFSGFQASSCVNI
        E  +   QM   FSGF ++   N+
Subjt:  EGRYWRGQMEGSFSGFQASSCVNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTTACAAGCCTTCCTAATAATCTTCATCACCAAAAAATTACCAAAATTCCCAGAAAAGCAACAATAATAGATCAAAACAAACCCATTAAAGTGAAGTACAT
TTCAAGTCCTATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAG
AGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGT
TACTGGCGAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATTTTACAAGCCTTCCTAATAATCTTCATCACCAAAAAATTACCAAAATTCCCAGAAAAGCAACAATAATAGATCAAAACAAACCCATTAAAGTGAAGTACAT
TTCAAGTCCTATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAG
AGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGT
TACTGGCGAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
Protein sequenceShow/hide protein sequence
MENFTSLPNNLHHQKITKIPRKATIIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGR
YWRGQMEGSFSGFQASSCVNIW