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HG10006549 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006549
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionVQ domain-containing protein
Genome locationChr07:19749841..19750227
RNA-Seq ExpressionHG10006549
SyntenyHG10006549
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063578.1 hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]2.5e-2286.49Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC
        MMIKAS+ALEFRAIVQQLTGFDS+ TPTRRRN KS S+ ARTPSS FHAD EMEVLKFSDD MASLLQFDDQGC
Subjt:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC

KAG6599333.1 hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia]7.3e-3870.23Show/hide
Query:  MGKCGENPYNN--QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPS-STFHADHEMEVLKFSDDMASLL
        MGKCGEN + +  QSQNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTGF S +PTRR NHK P + A+TPS ST HA+ +ME LK SD+M+SLL
Subjt:  MGKCGENPYNN--QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPS-STFHADHEMEVLKFSDDMASLL

Query:  QFDDQGCFATHNNNILPNNDIMGFQSSYFFQ
        +FDD+ CF T  +N+L NN  MGFQ+S  FQ
Subjt:  QFDDQGCFATHNNNILPNNDIMGFQSSYFFQ

KGN60779.1 hypothetical protein Csa_019238 [Cucumis sativus]4.7e-4578.57Show/hide
Query:  MGKCGENPYNN--------QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSD
        MGKCGEN Y N        Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS+TPTRRRN K  S+ ARTPS+ FHAD HEMEVLKFSD
Subjt:  MGKCGENPYNN--------QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSD

Query:  D--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ
        D  M SLLQFD QGCF T +NNNILPNN IM FQSS FFQ
Subjt:  D--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ

OMO71983.1 VQ motif-containing protein [Corchorus capsularis]4.2e-0940.68Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFH-----ADHEMEVLKFSDDMASLLQFDDQGCFA
        +S+NPTKV++ PIKV YI SP M+K SNA EFRAIVQ+LTG +SDT  +  N    +   +  ++  H      D  + +  F  DM+S L+FD+   + 
Subjt:  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFH-----ADHEMEVLKFSDDMASLLQFDDQGCFA

Query:  THNNNILPNNDIMGFQSS
                  D++GFQSS
Subjt:  THNNNILPNNDIMGFQSS

XP_021282108.1 uncharacterized protein LOC110414990 [Herrania umbratica]9.9e-1143.55Show/hide
Query:  NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD------HEMEVL-KFSDDMASLLQFDDQG
        ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD         +    A    S FH D       +  +L  F DDM+S L+FD+  
Subjt:  NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD------HEMEVL-KFSDDMASLLQFDDQG

Query:  CFATHNNNILPNNDIMGFQSSYFF
         +       +P N + GFQS + F
Subjt:  CFATHNNNILPNNDIMGFQSSYFF

TrEMBL top hitse value%identityAlignment
A0A0A0LIA7 VQ domain-containing protein2.3e-4578.57Show/hide
Query:  MGKCGENPYNN--------QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSD
        MGKCGEN Y N        Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS+TPTRRRN K  S+ ARTPS+ FHAD HEMEVLKFSD
Subjt:  MGKCGENPYNN--------QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSD

Query:  D--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ
        D  M SLLQFD QGCF T +NNNILPNN IM FQSS FFQ
Subjt:  D--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ

A0A1R3HNT0 VQ motif-containing protein2.0e-0940.68Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFH-----ADHEMEVLKFSDDMASLLQFDDQGCFA
        +S+NPTKV++ PIKV YI SP M+K SNA EFRAIVQ+LTG +SDT  +  N    +   +  ++  H      D  + +  F  DM+S L+FD+   + 
Subjt:  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFH-----ADHEMEVLKFSDDMASLLQFDDQGCFA

Query:  THNNNILPNNDIMGFQSS
                  D++GFQSS
Subjt:  THNNNILPNNDIMGFQSS

A0A1R3JNE3 VQ motif-containing protein6.5e-0837.9Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFH-----------ADHEMEVLKFSDDMASLLQFD
        +S+NP KV++ PIKV YI+SP M+K SNA EFRAIVQ+LTG +SDT  +  N    +   +  ++  H            D  + +  F  DM+S L+FD
Subjt:  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFH-----------ADHEMEVLKFSDDMASLLQFD

Query:  DQGCFATHNNNILPNNDIMGFQSS
        +   +           D+ GFQSS
Subjt:  DQGCFATHNNNILPNNDIMGFQSS

A0A5A7V7M1 VQ domain-containing protein1.2e-2286.49Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC
        MMIKAS+ALEFRAIVQQLTGFDS+ TPTRRRN KS S+ ARTPSS FHAD EMEVLKFSDD MASLLQFDDQGC
Subjt:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC

A0A6J1A533 uncharacterized protein LOC1104149904.8e-1143.55Show/hide
Query:  NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD------HEMEVL-KFSDDMASLLQFDDQG
        ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD         +    A    S FH D       +  +L  F DDM+S L+FD+  
Subjt:  NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD------HEMEVL-KFSDDMASLLQFDDQG

Query:  CFATHNNNILPNNDIMGFQSSYFF
         +       +P N + GFQS + F
Subjt:  CFATHNNNILPNNDIMGFQSSYFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGTGTGGAGAGAATCCATACAACAACCAAAGCCAAAACCCTACAAAAGTTCAAAGGAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGC
AAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAACGGTGCCCGAACTC
CATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTGCAACACACAATAAT
AATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGTGTGGAGAGAATCCATACAACAACCAAAGCCAAAACCCTACAAAAGTTCAAAGGAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGC
AAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAACGGTGCCCGAACTC
CATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTGCAACACACAATAAT
AATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG
Protein sequenceShow/hide protein sequence
MGKCGENPYNNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDDMASLLQFDDQGCFATHNN
NILPNNDIMGFQSSYFFQ