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HG10006561 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006561
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBeta_elim_lyase domain-containing protein
Genome locationChr07:19850483..19853208
RNA-Seq ExpressionHG10006561
SyntenyHG10006561
Gene Ontology termsGO:0006545 - glycine biosynthetic process (biological process)
GO:0006567 - threonine catabolic process (biological process)
GO:0006952 - defense response (biological process)
GO:0005829 - cytosol (cellular component)
GO:0008732 - L-allo-threonine aldolase activity (molecular function)
InterPro domainsIPR001597 - Aromatic amino acid beta-eliminating lyase/threonine aldolase
IPR015421 - Pyridoxal phosphate-dependent transferase, major domain
IPR015422 - Pyridoxal phosphate-dependent transferase, small domain
IPR015424 - Pyridoxal phosphate-dependent transferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586334.1 putative low-specificity L-threonine aldolase 1, partial [Cucurbita argyrosperma subsp. sororia]7.5e-4594.34Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILA G+N IKGL +ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        LVETNI
Subjt:  LVETNI

KAG7021181.1 putative low-specificity L-threonine aldolase 1 [Cucurbita argyrosperma subsp. argyrosperma]7.5e-4594.34Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILA G+N IKGL +ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        LVETNI
Subjt:  LVETNI

XP_004139254.1 probable low-specificity L-threonine aldolase 1 [Cucumis sativus]2.8e-4491.51Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV+RLVQAADSVSVCLSKGLGAPVGSVIVGS+AFI KARRLRKTLGGGMRQVG+LCAAALVAIQENIVKLEGDHENAKILA GLN+IKGLQ+ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        L+ETNI
Subjt:  LVETNI

XP_022938289.1 probable low-specificity L-threonine aldolase 1 [Cucurbita moschata]2.2e-4493.4Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPVNRLVQ ADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILA G+N IKGL +ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        LVETNI
Subjt:  LVETNI

XP_038891136.1 probable low-specificity L-threonine aldolase 1 [Benincasa hispida]1.2e-4595.28Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVG+LCAAALVAIQENIVKLEGDHENAKILA GL EIKGLQ+ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        LVETNI
Subjt:  LVETNI

TrEMBL top hitse value%identityAlignment
A0A0A0LI99 Beta_elim_lyase domain-containing protein1.4e-4491.51Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV+RLVQAADSVSVCLSKGLGAPVGSVIVGS+AFI KARRLRKTLGGGMRQVG+LCAAALVAIQENIVKLEGDHENAKILA GLN+IKGLQ+ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        L+ETNI
Subjt:  LVETNI

A0A1S3C391 probable low-specificity L-threonine aldolase 14.0e-4490.57Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV+RLVQAADSVSVCLSKGLGAPVGSVIVGS+AFI KARRLRKTLGGGMRQVG+LCAAALVAIQENIVKLEGDHENAK LA GLN+IKGLQ+ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        L+ETNI
Subjt:  LVETNI

A0A6J1FDM7 probable low-specificity L-threonine aldolase 11.1e-4493.4Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPVNRLVQ ADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILA G+N IKGL +ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        LVETNI
Subjt:  LVETNI

A0A6J1HRZ4 probable low-specificity L-threonine aldolase 13.1e-4492.45Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARR+RK LGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILA G+N IKGL +ESH
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
        LVETNI
Subjt:  LVETNI

A0A7J9LL52 Beta_elim_lyase domain-containing protein (Fragment)7.8e-4082.08Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALG+PV+RLVQAADSVSVCLSKGLGAPVGSVIVGS+ FITKARRLRKTLGGGMRQVGV+CAAALVA+QEN++KLEGDH+NAK+LA GLN+IKGL++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETNI
Subjt:  LVETNI

SwissProt top hitse value%identityAlignment
O07051 L-allo-threonine aldolase1.2e-2454.72Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +A G  V  LV   DSVS+CLSKGLGAPVGS++VGS AFI +ARRLRK +GGGMRQ G+L  A L A+Q+++V+L  DH  A+ LA GL  + G++++  
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         V+TN+
Subjt:  LVETNI

P58319 Low specificity L-threonine aldolase1.1e-1748.35Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNE
        +A G  +  L Q  DS ++CLSKGLG PVGS++VG++ +I +A R RK  GGGMRQ G+L AA + A++ N+ +L+ DH+NA  +A  L E
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNE

P75823 Low specificity L-threonine aldolase1.4e-1747.25Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNE
        +A G  +  + Q  DS ++CLSKGLG PVGS++VG++ +I +A R RK  GGGMRQ G+L AA + A++ N+ +L+ DH+NA  +A  L E
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNE

Q8RXU4 Probable low-specificity L-threonine aldolase 18.6e-3670.75Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV++LV+AADSV VCLSKGLGAPVGSVIVGS++FI KA+ +RKTLGGGMRQ+GVLCAAALVA+QEN+ KL+ DH+ AK+LA GLN++KG+++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETN+
Subjt:  LVETNI

Q9FPH3 Probable low-specificity L-threonine aldolase 24.6e-3774.53Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV R+VQAADSVS+CLSKG+GAPVGSVIVGSK FITKAR LRKTLGGGMRQ+GVLCAAALVA+ EN+ KLE DH+ A++LA GLN I+ L++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETNI
Subjt:  LVETNI

Arabidopsis top hitse value%identityAlignment
AT1G08630.1 threonine aldolase 16.1e-3770.75Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV++LV+AADSV VCLSKGLGAPVGSVIVGS++FI KA+ +RKTLGGGMRQ+GVLCAAALVA+QEN+ KL+ DH+ AK+LA GLN++KG+++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETN+
Subjt:  LVETNI

AT1G08630.2 threonine aldolase 16.1e-3770.75Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV++LV+AADSV VCLSKGLGAPVGSVIVGS++FI KA+ +RKTLGGGMRQ+GVLCAAALVA+QEN+ KL+ DH+ AK+LA GLN++KG+++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETN+
Subjt:  LVETNI

AT1G08630.3 threonine aldolase 16.1e-3770.75Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV++LV+AADSV VCLSKGLGAPVGSVIVGS++FI KA+ +RKTLGGGMRQ+GVLCAAALVA+QEN+ KL+ DH+ AK+LA GLN++KG+++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETN+
Subjt:  LVETNI

AT3G04520.1 threonine aldolase 23.2e-3874.53Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV R+VQAADSVS+CLSKG+GAPVGSVIVGSK FITKAR LRKTLGGGMRQ+GVLCAAALVA+ EN+ KLE DH+ A++LA GLN I+ L++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETNI
Subjt:  LVETNI

AT3G04520.2 threonine aldolase 24.7e-3774.53Show/hide
Query:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH
        +ALGVPV R+VQAADSVS+CLSKG+GAPVGSVIVGSK FITKAR LRKTLGGGMRQ+GVLCAAALVA+ EN+ KLE DH+ A++LA GLN I+ L++   
Subjt:  MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESH

Query:  LVETNI
         VETNI
Subjt:  LVETNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTGGTGTTCCTGTTAACAGGCTTGTGCAAGCAGCTGATTCTGTATCGGTTTGTCTATCTAAGGGTCTAGGAGCTCCTGTTGGCTCTGTCATCGTTGGTTCAAA
AGCCTTCATTACCAAGGCGAGACGGCTGAGGAAAACGTTGGGAGGTGGGATGAGGCAGGTTGGTGTTCTTTGTGCTGCAGCATTGGTTGCAATACAAGAGAATATTGTGA
AACTTGAGGGAGATCATGAGAATGCTAAGATTTTGGCTGGGGGATTAAATGAAATCAAAGGATTGCAAATGGAAAGCCATTTGGTTGAAACAAACATCCAAGCAATGTCT
GGAGCAACTACAAATGAAAATGGCGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACTTGGTGTTCCTGTTAACAGGCTTGTGCAAGCAGCTGATTCTGTATCGGTTTGTCTATCTAAGGGTCTAGGAGCTCCTGTTGGCTCTGTCATCGTTGGTTCAAA
AGCCTTCATTACCAAGGCGAGACGGCTGAGGAAAACGTTGGGAGGTGGGATGAGGCAGGTTGGTGTTCTTTGTGCTGCAGCATTGGTTGCAATACAAGAGAATATTGTGA
AACTTGAGGGAGATCATGAGAATGCTAAGATTTTGGCTGGGGGATTAAATGAAATCAAAGGATTGCAAATGGAAAGCCATTTGGTTGAAACAAACATCCAAGCAATGTCT
GGAGCAACTACAAATGAAAATGGCGTGTAA
Protein sequenceShow/hide protein sequence
MALGVPVNRLVQAADSVSVCLSKGLGAPVGSVIVGSKAFITKARRLRKTLGGGMRQVGVLCAAALVAIQENIVKLEGDHENAKILAGGLNEIKGLQMESHLVETNIQAMS
GATTNENGV