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HG10006664 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006664
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAlba domain-containing protein
Genome locationChr07:20846636..20848401
RNA-Seq ExpressionHG10006664
SyntenyHG10006664
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]5.4e-5589.78Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_004139317.1 uncharacterized protein At2g34160 [Cucumis sativus]1.1e-5589.78Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLA+EK       +IATSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEERGEIG+ADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]1.7e-5691.24Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEK       +IATSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]5.4e-5589.78Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_038890892.1 uncharacterized protein At2g34160-like [Benincasa hispida]3.2e-5589.29Show/hide
Query:  MEEIVEGVNSMNLGS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDS
        MEEIVEGVNSMNL S   DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLA+EK       +IATSTVDIKDDS
Subjt:  MEEIVEGVNSMNLGS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDS

Query:  RGRPVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        RGRPVQKAKIEILLGKT+NFDELMAAAAEERGEIGDADEQ
Subjt:  RGRPVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like8.1e-5791.24Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEK       +IATSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein8.1e-5791.24Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEK       +IATSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1CNW3 uncharacterized protein At2g34160-like5.8e-5588.32Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGVNS+NLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIATVVTVAEILKNNGL VEK       +IATSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEERG+ GD DEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1G312 uncharacterized protein At2g34160-like2.6e-5589.78Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1KJN4 uncharacterized protein At2g34160-like7.6e-5589.05Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        PVQKAKIEI LGKTENFDELMAAAAEER E GDADEQ
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341606.2e-4678.91Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEI +GVN+MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTV EILKNNG AVEK       +I TSTVDIKDD+RGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEER
        PVQKAKIEI L K+E FDELMAAA EE+
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEER

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein2.3e-4877.54Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEI EGVN+MNL  D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTVAEILKNNG AVEK       +I TSTVDIKDDSRGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQH
        PVQKAKIEI L K+E FDELMAAA EE+ E  +A EQ+
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQH

AT2G34160.1 Alba DNA/RNA-binding protein4.4e-4778.91Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR
        MEEI +GVN+MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTV EILKNNG AVEK       +I TSTVDIKDD+RGR
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGR

Query:  PVQKAKIEILLGKTENFDELMAAAAEER
        PVQKAKIEI L K+E FDELMAAA EE+
Subjt:  PVQKAKIEILLGKTENFDELMAAAAEER

AT3G04620.1 Alba DNA/RNA-binding protein1.1e-3469.81Show/hide
Query:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTE
        +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVT++EILKNNGLA EK       ++ TSTV +KD+++G+ VQKAKIEI+LGK++
Subjt:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTE

Query:  NFDELM
         FD L+
Subjt:  NFDELM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAATTGTAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAA
TCTCGCTAAGAGGTACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGG
CTGTTGAGAAGATGACTTGCATCAAATCTACAGAGATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATTGAGATATTG
CTGGGGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAATTGTAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAA
TCTCGCTAAGAGGTACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGG
CTGTTGAGAAGATGACTTGCATCAAATCTACAGAGATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATTGAGATATTG
CTGGGGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAA
Protein sequenceShow/hide protein sequence
MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEIL
LGKTENFDELMAAAAEERGEIGDADEQH