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HG10006672 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006672
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationChr07:20906743..20908056
RNA-Seq ExpressionHG10006672
SyntenyHG10006672
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139322.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus]4.2e-4982.24Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY +Y I      +EVLAGDWYCNCGAHNYASRS+CY+C  NAYK+LDIGALP WKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDW

Query:  ICTRRSC
        IC+R  C
Subjt:  ICTRRSC

XP_022143171.1 uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia]2.4e-4983.18Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLD-IGALPAWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEY    +TDH  +LAGDWYCNCGAHNYASRS CYRC  NA+K +D IGALP WKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLD-IGALPAWKSGDW

Query:  ICTRRSC
        ICTR  C
Subjt:  ICTRRSC

XP_022966014.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]1.9e-4982.69Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+      +  EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DIGALP WKSGDWIC 
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT

Query:  RRSC
        R  C
Subjt:  RRSC

XP_023538268.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]5.5e-4981.73Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+      +  EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DIGALP WKSGDWIC 
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT

Query:  RRSC
        R  C
Subjt:  RRSC

XP_038890693.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]3.7e-5386.54Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+ Y+  I+++TD  EVLAGDWYCNCGAHNYASRSTCYRCNAYKTLD+GALP WKSGDWICT
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT

Query:  RRSC
        R  C
Subjt:  RRSC

TrEMBL top hitse value%identityAlignment
A0A0A0LIX1 Uncharacterized protein2.0e-4982.24Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY +Y I      +EVLAGDWYCNCGAHNYASRS+CY+C  NAYK+LDIGALP WKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDW

Query:  ICTRRSC
        IC+R  C
Subjt:  ICTRRSC

A0A1S3C6B6 uncharacterized RNA-binding protein C17H9.04c2.6e-4982.24Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY +Y I      +EVLAGDWYCNCGAHNYASRS+CYRC  NAYK+LDIGALP WKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDW

Query:  ICTRRSC
        IC+R  C
Subjt:  ICTRRSC

A0A6J1CPG4 uncharacterized RNA-binding protein C17H9.04c-like1.2e-4983.18Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLD-IGALPAWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEY    +TDH  +LAGDWYCNCGAHNYASRS CYRC  NA+K +D IGALP WKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTLD-IGALPAWKSGDW

Query:  ICTRRSC
        ICTR  C
Subjt:  ICTRRSC

A0A6J1FCS1 zinc finger Ran-binding domain-containing protein 2-like2.9e-4880.77Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+      +  EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DI ALP WKSGDWIC 
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT

Query:  RRSC
        R  C
Subjt:  RRSC

A0A6J1HSH3 zinc finger Ran-binding domain-containing protein 2-like9.1e-5082.69Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+      +  EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DIGALP WKSGDWIC 
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICT

Query:  RRSC
        R  C
Subjt:  RRSC

SwissProt top hitse value%identityAlignment
O95218 Zinc finger Ran-binding domain-containing protein 21.7e-0536.17Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK
        N   S GDW+C    C +VNF +R +C RCG  K      TT   ++ A  T+  + L         A DW C  C   N+A RS C  CN  K
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK

Q19QU3 Zinc finger Ran-binding domain-containing protein 21.7e-0536.17Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK
        N   S GDW+C    C +VNF +R +C RCG  K      TT   ++ A  T+  + L         A DW C  C   N+A RS C  CN  K
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK

Q5R580 Zinc finger Ran-binding domain-containing protein 21.7e-0536.17Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK
        N   S GDW+C    C +VNF +R +C RCG  K      TT   ++ A  T+  + L         A DW C  C   N+A RS C  CN  K
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 23.5e-0637.23Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK
        N   S GDW+C    C +VNF +R +C RCG  K      TT   ++ A  T+  + L         A DW C  CG  N+A RS C  CN  K
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK

Q9R020 Zinc finger Ran-binding domain-containing protein 21.7e-0536.17Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK
        N   S GDW+C    C +VNF +R +C RCG  K      TT   ++ A  T+  + L         A DW C  C   N+A RS C  CN  K
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINA-RTDHNEVL---------AGDWYC-NCGAHNYASRSTCYRCNAYK

Arabidopsis top hitse value%identityAlignment
AT1G48570.1 zinc finger (Ran-binding) family protein1.5e-0932.38Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYC-NCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDWICTRRSC
        GDW+C  C  +NF + ++C +C   K  GP  T+   I+       E+  GDW C  CG  N+AS   C  C    +KTL        + GDW C     
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYC-NCGAHNYASRSTCYRC--NAYKTLDIGALPAWKSGDWICTRRSC

Query:  LKLRK
        +  R+
Subjt:  LKLRK

AT2G17975.1 zinc finger (Ran-binding) family protein4.8e-1130.28Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPK----------------------YGGPDP-------TTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC
        GDW+C  C + N+  RE C++CG  K                        GP+          +    N  + H E  +GDW C CG HNY+SR  C +C
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPK----------------------YGGPDP-------TTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRC

Query:  NAYKTLDIG
        N    L +G
Subjt:  NAYKTLDIG

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.4e-3450.41Show/hide
Query:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYC---NCGAHNYASRSTCYRCN----------------AYKT
        M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY Y      +  EV+AGDWYC   NCG+HNYASR++CYRC                 AY  
Subjt:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYC---NCGAHNYASRSTCYRCN----------------AYKT

Query:  LDIGALPAWKSGDWICTRRSC
              P WK+GDW+C R  C
Subjt:  LDIGALPAWKSGDWICTRRSC

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein8.8e-2135.97Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYIINARTDHNEVLAGDWYC---NCGAHNYASRSTCYRCNAYK---------
        GDW C  C H+NF++R++CQRCG             +  +GG   + + +     T  ++V  GDWYC   NCG HN+ASRSTC++C  +K         
Subjt:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYIINARTDHNEVLAGDWYC---NCGAHNYASRSTCYRCNAYK---------

Query:  ---------TLDI--------GALPAWKSGDWICTRRSC
                   DI        G   +WKSGDWICTR  C
Subjt:  ---------TLDI--------GALPAWKSGDWICTRRSC

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.7e-1934.27Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPD----------PTTYEYIINARTDHNEVLAGDWYCN---CGAHNYASRSTCYRCNAYKT-----------
        GDW C +C H+NF++R++CQRC  P+ GG            P +  +  N   D   V  GDWYCN   CG HN+A+RS+C++C A K            
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPD----------PTTYEYIINARTDHNEVLAGDWYCN---CGAHNYASRSTCYRCNAYKT-----------

Query:  --LDIGALP--------------------AWKSGDWICTRRSC
          +D+   P                     WKSGDWIC R  C
Subjt:  --LDIGALP--------------------AWKSGDWICTRRSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCTAAATATGGTGGCCC
TGATCCAACAACATATGAATATATTATTAATGCTAGAACAGATCATAATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCTCATAATTATGCTAGTAGATCAA
CTTGTTACAGATGTAATGCTTATAAAACTCTTGATATTGGTGCTTTGCCTGCTTGGAAATCTGGTGATTGGATCTGCACTAGGAGAAGCTGTTTGAAACTAAGGAAGCTG
ATTTTGGAAGAATTGTTTGGTGATACTAAATATTTGGCCAACTTACAAGCTTCTGGCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCTAAATATGGTGGCCC
TGATCCAACAACATATGAATATATTATTAATGCTAGAACAGATCATAATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCTCATAATTATGCTAGTAGATCAA
CTTGTTACAGATGTAATGCTTATAAAACTCTTGATATTGGTGCTTTGCCTGCTTGGAAATCTGGTGATTGGATCTGCACTAGGAGAAGCTGTTTGAAACTAAGGAAGCTG
ATTTTGGAAGAATTGTTTGGTGATACTAAATATTTGGCCAACTTACAAGCTTCTGGCATCTGA
Protein sequenceShow/hide protein sequence
MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIINARTDHNEVLAGDWYCNCGAHNYASRSTCYRCNAYKTLDIGALPAWKSGDWICTRRSCLKLRKL
ILEELFGDTKYLANLQASGI