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HG10006745 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006745
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationChr07:21645811..21646167
RNA-Seq ExpressionHG10006745
SyntenyHG10006745
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]8.7e-5486.44Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CAVCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        CL++GQPP+S SSTLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-5486.44Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CAVCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        CL++GQPP+S SSTLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]3.9e-5487.29Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CAVCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        CL+AGQPP+S SSTLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]1.1e-5386.44Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAA +V AETTRNL+ AY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CAVCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        CL+AGQPP+S SSTLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

XP_038877422.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]1.5e-5085.59Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAAAAVM E TRNL A Y IEFLFDLDMVLSGADDFGCCQIS +DS+VADLP VV D+CAVCLEDF PDE GKQIPCGHVYHESCISSWLTVADCCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        C VAGQPPD   STLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein1.6e-4882.2Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAAAAVM E T NL + Y IEFLFDLD VLSGADD GCCQI+ SDS VAD PTVV D+CAVCL+DF PDE GKQIPCGHVYHESCISSWLTVADCCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        CLVAGQPPD   STLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

A0A1S4DZX3 RING-H2 finger protein ATL5-like3.2e-4680.67Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGC-CQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLC
        MAAAAVM E T  L + Y IEFLFDLD VLSGADD  C CQI+ SDS VAD PTVV D+CAVCL+DFRPDE GKQIPCGHVYHESCISSWLTVADCCPLC
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGC-CQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLC

Query:  RCLVAGQPPDSSSSTLIRR
        RCLVAGQPPD   STLIRR
Subjt:  RCLVAGQPPDSSSSTLIRR

A0A5A7V2P4 RING-H2 finger protein ATL5-like3.2e-4680.67Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGC-CQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLC
        MAAAAVM E T  L + Y IEFLFDLD VLSGADD  C CQI+ SDS VAD PTVV D+CAVCL+DFRPDE GKQIPCGHVYHESCISSWLTVADCCPLC
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGC-CQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLC

Query:  RCLVAGQPPDSSSSTLIRR
        RCLVAGQPPD   STLIRR
Subjt:  RCLVAGQPPDSSSSTLIRR

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like5.7e-4375.65Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQI---STSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCP
        MAA AV+AETTRNL+AAY +E LFDLDMVLSG DDFGCC +   ++SDS+VADLPTVV D+CAVC EDFR DEGGKQIPCGHVYHE CISSWL VADCCP
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQI---STSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCP

Query:  LCRCLVAGQPPDSSS
        LCR  V   PP S+S
Subjt:  LCRCLVAGQPPDSSS

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like1.9e-5487.29Show/hide
Query:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CAVCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

Query:  CLVAGQPPDSSSSTLIRR
        CL+AGQPP+S SSTLIRR
Subjt:  CLVAGQPPDSSSSTLIRR

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING11.2e-0843.14Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD
        CAVC++DF      KQ+PC H+YH+ C+  WL + + CP+CR  +    PD
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD

Q8LPN7 E3 ubiquitin-protein ligase RING1-like6.8e-0937.33Show/hide
Query:  SDSVVADLPTVVV---------DLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD
        S S +  LPTV V         + CAVC+++F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Subjt:  SDSVVADLPTVVV---------DLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD

Q9D0C1 E3 ubiquitin-protein ligase RNF1155.2e-0940Show/hide
Query:  VADLPTVVVDL--------CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSST
        +  LPTV V          C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+  DS+  T
Subjt:  VADLPTVVVDL--------CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSST

Q9VHI7 E3 ubiquitin-protein ligase Iruka4.0e-0942.31Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS
        C++C +DF+ DE  +++PC H+YHE+CI  WL +   CP+CR  +A    D+
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS

Q9Y4L5 E3 ubiquitin-protein ligase RNF1156.8e-0938.67Show/hide
Query:  VADLPTVV-----VDL---CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSST
        +  LPTV      VD+   C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+     S +
Subjt:  VADLPTVV-----VDL---CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSST

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein9.7e-1144.44Show/hide
Query:  VVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        ++ D   V   +CA+C E+F   E GK++ C H+YH SCI SWL + + CP+CR
Subjt:  VVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

AT2G44330.1 RING/U-box superfamily protein8.2e-1052.38Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        CA+C EDF   E  +++PC H+YH  CI  WLT  + CPLCR
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR

AT3G19950.1 RING/U-box superfamily protein4.8e-1037.33Show/hide
Query:  SDSVVADLPTVVV---------DLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD
        S S +  LPTV V         + CAVC+++F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Subjt:  SDSVVADLPTVVV---------DLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD

AT3G58720.1 RING/U-box superfamily protein2.4e-0944.44Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSS
        C+VCLEDF P E     PC H++HE CI  WL     CP+CR ++       SS
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSS

AT3G60080.1 RING/U-box superfamily protein4.8e-1053.49Show/hide
Query:  LCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR
        LCAVC EDF   E  +++PC H+YH  CI  WL+  + CPLCR
Subjt:  LCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCGCTGCTGTGATGGCTGAGACGACAAGAAACTTATCGGCGGCATATCAAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTCGG
TTGCTGCCAGATCAGCACTTCCGATTCCGTTGTGGCGGATTTGCCGACGGTGGTGGTCGATCTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAAC
AAATCCCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCTTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCCAACCGCCGGATTCT
TCTTCTTCGACTTTGATCCGACGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCGCTGCTGTGATGGCTGAGACGACAAGAAACTTATCGGCGGCATATCAAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTCGG
TTGCTGCCAGATCAGCACTTCCGATTCCGTTGTGGCGGATTTGCCGACGGTGGTGGTCGATCTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAAC
AAATCCCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCTTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCCAACCGCCGGATTCT
TCTTCTTCGACTTTGATCCGACGGTAG
Protein sequenceShow/hide protein sequence
MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS
SSSTLIRR