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HG10006798 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006798
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosomal protein L18ae family
Genome locationChr07:22123897..22125116
RNA-Seq ExpressionHG10006798
SyntenyHG10006798
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]6.9e-5696.4Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        +DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]1.4e-5698.2Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        +DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

XP_011648592.1 uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]6.9e-5696.4Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        +DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]1.0e-5494.59Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        ID TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAAS+IA
Subjt:  ERAGLAASAIA

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]1.6e-57100Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein3.3e-5696.4Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        +DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

A0A1S3CAZ9 uncharacterized protein LOC1034986586.7e-5798.2Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        +DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

A0A5D3CGZ6 60S ribosomal protein L18a-16.7e-5798.2Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        +DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAASAIA
Subjt:  ERAGLAASAIA

A0A6J1G4J6 uncharacterized protein LOC1114506864.8e-5594.59Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        ID TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAAS+IA
Subjt:  ERAGLAASAIA

A0A6J1KAT7 uncharacterized protein LOC1114937951.1e-5493.69Show/hide
Query:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR
        ID TVQLVKSVSD+HLDLLRP+ARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RRDPR
Subjt:  IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPR

Query:  ERAGLAASAIA
        ERAGLAAS+IA
Subjt:  ERAGLAASAIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family7.7e-2167.12Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIA
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIA
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIA

AT1G54217.2 Ribosomal protein L18ae family2.0e-2163.29Show/hide
Query:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIA
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIA
Subjt:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIA

AT4G26060.1 Ribosomal protein L18ae family1.8e-3360Show/hide
Query:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPR
        D + +LVKSV+DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP +WYYAT+LYF N  R+DPR
Subjt:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPR

Query:  ERAGLAASAIALFSY
        ERAGLAASAI    +
Subjt:  ERAGLAASAIALFSY

AT5G57060.1 FUNCTIONS IN: molecular_function unknown2.8e-3156.76Show/hide
Query:  QLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAG
        +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAG
Subjt:  QLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAG

Query:  LAASAIALFSY
        LAASAI    +
Subjt:  LAASAIALFSY

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)8.5e-2866.27Show/hide
Query:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIALFSY
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAGLAASAI    +
Subjt:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIALFSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGACCAGACGGTGCAACTGGTGAAGTCGGTCTCTGATAAACATCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTTC
AGACCACATAAGGAGCAAGTACACACTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGTGGCATAGGATGGTTTTCTT
TCCTCCTCGGGTTTTTTTTCCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGAGAACGAGCTGGATTAGCTGCGTCTGCCATT
GCTCTGTTCTCCTATGATAGCCCTTCCTTCTCCACACTTGAAACAGCATTCTTAATCTTTGCCTCTTCAGCCTTGCCAATGCAGTTTCAATCTGAACAGGTTTCGTGGAT
GTGCAGATAA
mRNA sequenceShow/hide mRNA sequence
ATTGACCAGACGGTGCAACTGGTGAAGTCGGTCTCTGATAAACATCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTTC
AGACCACATAAGGAGCAAGTACACACTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGTGGCATAGGATGGTTTTCTT
TCCTCCTCGGGTTTTTTTTCCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGAGAACGAGCTGGATTAGCTGCGTCTGCCATT
GCTCTGTTCTCCTATGATAGCCCTTCCTTCTCCACACTTGAAACAGCATTCTTAATCTTTGCCTCTTCAGCCTTGCCAATGCAGTTTCAATCTGAACAGGTTTCGTGGAT
GTGCAGATAA
Protein sequenceShow/hide protein sequence
IDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAI
ALFSYDSPSFSTLETAFLIFASSALPMQFQSEQVSWMCR