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HG10006839 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006839
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUracil-DNA glycosylase
Genome locationChr07:22471918..22474797
RNA-Seq ExpressionHG10006839
SyntenyHG10006839
Gene Ontology termsGO:0097510 - base-excision repair, AP site formation via deaminated base removal (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0004844 - uracil DNA N-glycosylase activity (molecular function)
InterPro domainsIPR002043 - Uracil-DNA glycosylase family 1
IPR005122 - Uracil-DNA glycosylase-like
IPR036895 - Uracil-DNA glycosylase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140430.1 uracil-DNA glycosylase, mitochondrial [Cucumis sativus]1.1e-4695.79Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VRKHQANSHAK+GWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTN+LLKE+GTA+IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

XP_008465225.1 PREDICTED: uracil-DNA glycosylase, mitochondrial isoform X1 [Cucumis melo]1.9e-4693.75Show/hide
Query:  MVRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        +VR+HQANSHAK+GWEQFTDAVIKTISQKKEGI+FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTN+LLKELGTA+IDWQL
Subjt:  MVRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

XP_008465227.1 PREDICTED: uracil-DNA glycosylase, mitochondrial isoform X2 [Cucumis melo]2.4e-4694.74Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VR+HQANSHAK+GWEQFTDAVIKTISQKKEGI+FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTN+LLKELGTA+IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

XP_022981553.1 uracil-DNA glycosylase, mitochondrial [Cucurbita maxima]1.6e-4593.68Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VRKHQANSHAKKGWEQFTDAVI+TISQKKEG++FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELG  +IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

XP_038891400.1 uracil-DNA glycosylase, mitochondrial [Benincasa hispida]1.1e-4696.84Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VRKHQANSHAKKGWEQFTDAVIKTISQKKEGI+FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSA+RGFFGCRHFSRTNVLLKELGTA+IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

TrEMBL top hitse value%identityAlignment
A0A0A0KMG3 Uracil-DNA glycosylase5.3e-4795.79Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VRKHQANSHAK+GWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTN+LLKE+GTA+IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

A0A1S3CND7 Uracil-DNA glycosylase9.1e-4793.75Show/hide
Query:  MVRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        +VR+HQANSHAK+GWEQFTDAVIKTISQKKEGI+FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTN+LLKELGTA+IDWQL
Subjt:  MVRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

A0A1S3CPW3 Uracil-DNA glycosylase1.2e-4694.74Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VR+HQANSHAK+GWEQFTDAVIKTISQKKEGI+FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTN+LLKELGTA+IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

A0A6J1EEH8 Uracil-DNA glycosylase6.5e-4592.63Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VRKHQANSHAKKGWEQFTD VIKTISQ KEG++FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELG   IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

A0A6J1J2E4 Uracil-DNA glycosylase7.7e-4693.68Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VRKHQANSHAKKGWEQFTDAVI+TISQKKEG++FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELG  +IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

SwissProt top hitse value%identityAlignment
P13051 Uracil-DNA glycosylase1.5e-3060.64Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQ
        VR HQANSH ++GWEQFTDAV+  ++Q   G++FLLWG+ AQ K   ID K+HH+L+ AHPS LS  RGFFGCRHFS+TN LL++ G   IDW+
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQ

P97931 Uracil-DNA glycosylase4.8e-2957.45Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQ
        VR HQANSH ++GWEQFTDAV+  ++Q   G++FLLWG+ AQ K  +ID K+HH+L+ AHPS LS +RGF GCRHFS+ N LL++ G   I+W+
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQ

Q182G9 Uracil-DNA glycosylase2.8e-2956.84Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VR H+ANSH  KGWE FTD VI  +S++++ +IF+LWG++A+ K+ LID  KH+IL+A HPS LSA++GFFGC+HFS+ N +LK+LG   I+WQ+
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

Q8R634 Uracil-DNA glycosylase2.2e-2956.84Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VR  +ANSH+K GW+ FTD VIK+++++++ +IF+LWGN+A++K + ID  KH+ILK  HPS LSAN+GFFGC+HFS  N +LK LG   IDWQ+
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

Q9LIH6 Uracil-DNA glycosylase, mitochondrial4.8e-3774.74Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VR  Q NSHAKKGWEQFTDAVI++ISQ+KEG++FLLWG  AQ K +LID  KHHIL AAHPSGLSANRGFF CRHFSR N LL+E+G   IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL

Arabidopsis top hitse value%identityAlignment
AT3G18630.1 uracil dna glycosylase3.4e-3874.74Show/hide
Query:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL
        VR  Q NSHAKKGWEQFTDAVI++ISQ+KEG++FLLWG  AQ K +LID  KHHIL AAHPSGLSANRGFF CRHFSR N LL+E+G   IDWQL
Subjt:  VRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGAAAGCATCAAGCCAACTCCCATGCTAAGAAAGGATGGGAACAATTCACTGATGCTGTCATCAAGACAATATCACAAAAGAAGGAAGGGATTATCTTTCTACT
TTGGGGGAACTCTGCTCAGGCAAAATTGAGGTTAATTGATGAGAAAAAGCATCATATTCTCAAAGCAGCGCATCCTTCTGGTTTGTCTGCTAACAGAGGCTTCTTTGGTT
GCAGGCATTTTTCTCGAACAAACGTGCTTCTCAAGGAACTAGGTACTGCCACCATAGACTGGCAACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGAAAGCATCAAGCCAACTCCCATGCTAAGAAAGGATGGGAACAATTCACTGATGCTGTCATCAAGACAATATCACAAAAGAAGGAAGGGATTATCTTTCTACT
TTGGGGGAACTCTGCTCAGGCAAAATTGAGGTTAATTGATGAGAAAAAGCATCATATTCTCAAAGCAGCGCATCCTTCTGGTTTGTCTGCTAACAGAGGCTTCTTTGGTT
GCAGGCATTTTTCTCGAACAAACGTGCTTCTCAAGGAACTAGGTACTGCCACCATAGACTGGCAACTTTGA
Protein sequenceShow/hide protein sequence
MVRKHQANSHAKKGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTATIDWQL