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HG10006844 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006844
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA repair protein XRCC2 homolog isoform X1
Genome locationChr07:22496648..22504073
RNA-Seq ExpressionHG10006844
SyntenyHG10006844
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648111.1 hypothetical protein Csa_004719 [Cucumis sativus]2.0e-5690Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERD LGVGLHLLVIDSIGAYHWVDR+SSSLPLW HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIASKATIFGDRSSD V+R+K+LS+SEL+H
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GKPDGGL LYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
XP_008456835.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]6.8e-5790.83Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDR+SSSLP W HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+KSLS+SELRH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GKPDGGL LYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
XP_008456836.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]6.8e-5790.83Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDR+SSSLP W HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+KSLS+SELRH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GKPDGGL LYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
XP_008456838.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo]4.2e-5991.87Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDR+SSSLP W HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+KSLS+SELRH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQTNIL
        GKPDGGL LYREYMPSAWQTNIL
Subjt:  GKPDGGLVLYREYMPSAWQTNIL
XP_038891841.1 DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida]1.2e-5692.5Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLW HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIASKATIFG+RSSDIVRRE+SLS+SE RH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GK DGG VLYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
TrEMBL top hitse value%identityAlignment
A0A0A0KMH0 RECA_2 domain-containing protein9.6e-5790Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERD LGVGLHLLVIDSIGAYHWVDR+SSSLPLW HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIASKATIFGDRSSD V+R+K+LS+SEL+H
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GKPDGGL LYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
A0A1S3C3R7 DNA repair protein XRCC2 homolog isoform X13.3e-5790.83Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDR+SSSLP W HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+KSLS+SELRH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GKPDGGL LYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
A0A1S3C456 DNA repair protein XRCC2 homolog isoform X32.1e-5991.87Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDR+SSSLP W HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+KSLS+SELRH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQTNIL
        GKPDGGL LYREYMPSAWQTNIL
Subjt:  GKPDGGLVLYREYMPSAWQTNIL
A0A1S3C491 DNA repair protein XRCC2 homolog isoform X23.3e-5790.83Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDR+SSSLP W HNRKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+KSLS+SELRH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GKPDGGL LYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
A0A6J1GYM0 DNA repair protein XRCC2 homolog isoform X24.4e-5487.5Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH
        MHHKLQKERD LG+ LHLL+IDSIGAYHWVDRVSSSLPLW +NRKGFSLAN+LEAAVEE++KLLLVHPSIVIASKATIFGDRSSDIVRREKSLS++E RH
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRH

Query:  GKPDGGLVLYREYMPSAWQT
        GK DGG VLYREYMPSAWQ+
Subjt:  GKPDGGLVLYREYMPSAWQT
SwissProt top hitse value%identityAlignment
Q682D3 DNA repair protein XRCC2 homolog1.4e-2042.5Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSDSELR
        +H+++Q +++  G  + +L+IDSIGA+HW DR+SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++  ++   R+ S +D    
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSDSELR

Query:  HGKPDGGLVLYREYMPSAWQ
        +         +RE+MPS+WQ
Subjt:  HGKPDGGLVLYREYMPSAWQ
Arabidopsis top hitse value%identityAlignment
AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)9.9e-2242.5Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSDSELR
        +H+++Q +++  G  + +L+IDSIGA+HW DR+SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++  ++   R+ S +D    
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSDSELR

Query:  HGKPDGGLVLYREYMPSAWQ
        +         +RE+MPS+WQ
Subjt:  HGKPDGGLVLYREYMPSAWQ
AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)9.9e-2242.5Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSDSELR
        +H+++Q +++  G  + +L+IDSIGA+HW DR+SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++  ++   R+ S +D    
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSDSELR

Query:  HGKPDGGLVLYREYMPSAWQ
        +         +RE+MPS+WQ
Subjt:  HGKPDGGLVLYREYMPSAWQ
AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)1.3e-1850Show/hide
Query:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR
        +H+++Q +++  G  + +L+IDSIGA+HW DR+SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++
Subjt:  MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCATAAACTTCAAAAAGAAAGAGATGGCCTTGGAGTTGGGTTACATCTACTTGTGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTT
GCCTCTGTGGGATCACAACAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTT
CAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCTTTATCAGACTCAGAATTGAGACATGGGAAACCCGATGGTGGACTAGTTTTGTAC
CGAGAGTATATGCCTTCTGCATGGCAGACGAACATCTTACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCATAAACTTCAAAAAGAAAGAGATGGCCTTGGAGTTGGGTTACATCTACTTGTGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTT
GCCTCTGTGGGATCACAACAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTT
CAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCTTTATCAGACTCAGAATTGAGACATGGGAAACCCGATGGTGGACTAGTTTTGTAC
CGAGAGTATATGCCTTCTGCATGGCAGACGAACATCTTACAGTGA
Protein sequenceShow/hide protein sequence
MHHKLQKERDGLGVGLHLLVIDSIGAYHWVDRVSSSLPLWDHNRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRHGKPDGGLVLY
REYMPSAWQTNILQ