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HG10006845 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006845
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA repair protein XRCC2 homolog
Genome locationChr07:22507191..22507825
RNA-Seq ExpressionHG10006845
SyntenyHG10006845
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013632 - DNA recombination and repair protein Rad51-like, C-terminal
IPR020588 - DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456838.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo]2.4e-4891.15Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNGLL
        KLRILEAISNG L
Subjt:  KLRILEAISNGLL

XP_038891840.1 DNA repair protein XRCC2 homolog isoform X1 [Benincasa hispida]2.6e-5093.69Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        MALSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIR+GGLECS VFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNG
        KLRILEAISNG
Subjt:  KLRILEAISNG

XP_038891841.1 DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida]2.6e-5093.69Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        MALSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIR+GGLECS VFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNG
        KLRILEAISNG
Subjt:  KLRILEAISNG

XP_038891842.1 DNA repair protein XRCC2 homolog isoform X3 [Benincasa hispida]2.6e-5093.69Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        MALSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIR+GGLECS VFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNG
        KLRILEAISNG
Subjt:  KLRILEAISNG

XP_038891843.1 DNA repair protein XRCC2 homolog isoform X4 [Benincasa hispida]2.6e-5093.69Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        MALSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIR+GGLECS VFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNG
        KLRILEAISNG
Subjt:  KLRILEAISNG

TrEMBL top hitse value%identityAlignment
A0A1S3C3R7 DNA repair protein XRCC2 homolog isoform X11.2e-4891.15Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNGLL
        KLRILEAISNG L
Subjt:  KLRILEAISNGLL

A0A1S3C456 DNA repair protein XRCC2 homolog isoform X31.2e-4891.15Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNGLL
        KLRILEAISNG L
Subjt:  KLRILEAISNGLL

A0A1S3C491 DNA repair protein XRCC2 homolog isoform X21.2e-4891.15Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNGLL
        KLRILEAISNG L
Subjt:  KLRILEAISNGLL

A0A5D3CVL4 DNA repair protein XRCC2-like protein isoform X31.5e-4890.27Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNGLL
        KLRILEAISNG +
Subjt:  KLRILEAISNGLL

A0A6J1GYJ6 DNA repair protein XRCC2 homolog isoform X34.4e-4887.39Show/hide
Query:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL
        MAL QWIDGDE+A EML RVHKERTSL+VPPLHRVPL  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIR+GGLECS VFIDLDCRLDI+RLSQVL
Subjt:  MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVL

Query:  KLRILEAISNG
        KLRILE   +G
Subjt:  KLRILEAISNG

SwissProt top hitse value%identityAlignment
O43543 DNA repair protein XRCC23.1e-0636.27Show/hide
Query:  ESALEMLVRVHKERTSL--VVPPL---HRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL
        ES  E+L R+ + R+SL  + P L      P+  G+++E  GP G+ KT++L      CILPK       GGLE   +FID D   D+ RL  +L+ R+ 
Subjt:  ESALEMLVRVHKERTSL--VVPPL---HRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL

Query:  EA
        ++
Subjt:  EA

Q682D3 DNA repair protein XRCC2 homolog1.2e-3465.74Show/hide
Query:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL
        WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CILPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL

Query:  EA--ISNG
        +A  + NG
Subjt:  EA--ISNG

Q9CX47 DNA repair protein XRCC29.0e-0638.24Show/hide
Query:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEA
        G++ E  GP G+ KT++L      CILPK       GGL+   +FID D   D+ RL  VL+ R+ ++
Subjt:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEA

Arabidopsis top hitse value%identityAlignment
AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)8.5e-3665.74Show/hide
Query:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL
        WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CILPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL

Query:  EA--ISNG
        +A  + NG
Subjt:  EA--ISNG

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)8.5e-3665.74Show/hide
Query:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL
        WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CILPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL

Query:  EA--ISNG
        +A  + NG
Subjt:  EA--ISNG

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)8.5e-3665.74Show/hide
Query:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL
        WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CILPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRIL

Query:  EA--ISNG
        +A  + NG
Subjt:  EA--ISNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTCAGCCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGTCAGAGTTCACAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGCGCTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCC
GCTTTGGAGGCTTGGAGTGCTCAGCTGTGTTCATTGACTTAGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAAT
GGATTGTTGCGTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCTCAGCCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGTCAGAGTTCACAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGCGCTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCC
GCTTTGGAGGCTTGGAGTGCTCAGCTGTGTTCATTGACTTAGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAAT
GGATTGTTGCGTCTTTGA
Protein sequenceShow/hide protein sequence
MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN
GLLRL