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HG10006906 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006906
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionzf-RVT domain-containing protein
Genome locationChr07:23188979..23190387
RNA-Seq ExpressionHG10006906
SyntenyHG10006906
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW31180.1 hypothetical protein CK203_097661 [Vitis vinifera]5.9e-0439.06Show/hide
Query:  LLLAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVV
        L L+ S  SP +  +    + +W  Q P KVKFF+W ++HK ++T+D LQ+R  Y+ LSP   +
Subjt:  LLLAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVV

TrEMBL top hitse value%identityAlignment
A0A438BYP3 Putative mitochondrial protein4.9e-0441.94Show/hide
Query:  LAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVV
        LA S +S S    P   + +W  Q P KVK F+W ++HK ++T+D LQ+R  Y+VLSP   +
Subjt:  LAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVV

A0A438D6P3 zf-RVT domain-containing protein2.9e-0439.06Show/hide
Query:  LLLAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVV
        L L+ S  SP +  +    + +W  Q P KVKFF+W ++HK ++T+D LQ+R  Y+ LSP   +
Subjt:  LLLAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVV

A0A438GPP0 Putative ribonuclease H protein8.3e-0448.78Show/hide
Query:  ELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSP
        +L+W  Q P K+KFF+W ++HK ++T+D LQ+R  Y+ LSP
Subjt:  ELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSP

A5BPI6 Uncharacterized protein8.3e-0448.78Show/hide
Query:  ELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSP
        +L+W  Q P K+KFF+W ++HK ++T+D LQ+R  Y+ LSP
Subjt:  ELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCATTTTACTATTGGCGCCATCATTAGCTTCCCCAAGTGAAGACGAAGCACCAAAGCTTCATGAGTTGATTTGGACAGGCCAATACCCAAAGAAGGTTAAATTCTT
CTTATGGGAACTCTCCCATAAAGCCATACATACACATGACAAGTTACAAATAAGGATGTCTTACCAGGTTCTGTCCCCACAATGCGTCGTCGCCGCCGGCGCAGAATGTA
GAATCGCCGCCGATAGAAGCAGCGGCGGAGAAGATCTCCCGAGAGAGGAGAAGTCGTCGTGGGCGTTCCACGAGGGGCAAAGTTGGCGCGGAATAGATGGATGGGTCACG
GCGGAGATCGGTGGGTACTCGGAGTTGCAAAAGAGAAGGGATTTTGGATTGCGATTACTTGAGAGTAAAGCTTGGAAGAACAGGGGTTTCCTCTGTGGAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCATTTTACTATTGGCGCCATCATTAGCTTCCCCAAGTGAAGACGAAGCACCAAAGCTTCATGAGTTGATTTGGACAGGCCAATACCCAAAGAAGGTTAAATTCTT
CTTATGGGAACTCTCCCATAAAGCCATACATACACATGACAAGTTACAAATAAGGATGTCTTACCAGGTTCTGTCCCCACAATGCGTCGTCGCCGCCGGCGCAGAATGTA
GAATCGCCGCCGATAGAAGCAGCGGCGGAGAAGATCTCCCGAGAGAGGAGAAGTCGTCGTGGGCGTTCCACGAGGGGCAAAGTTGGCGCGGAATAGATGGATGGGTCACG
GCGGAGATCGGTGGGTACTCGGAGTTGCAAAAGAGAAGGGATTTTGGATTGCGATTACTTGAGAGTAAAGCTTGGAAGAACAGGGGTTTCCTCTGTGGAAGCTAA
Protein sequenceShow/hide protein sequence
MCILLLAPSLASPSEDEAPKLHELIWTGQYPKKVKFFLWELSHKAIHTHDKLQIRMSYQVLSPQCVVAAGAECRIAADRSSGGEDLPREEKSSWAFHEGQSWRGIDGWVT
AEIGGYSELQKRRDFGLRLLESKAWKNRGFLCGS