CuGenDBv2

Gene ID	HG10006974
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Component of oligomeric Golgi complex 3
Genome location	Chr07:23839481..23840745
RNA-Seq Expression	HG10006974
Synteny	HG10006974
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006886 - intracellular protein transport (biological process) GO:0006891 - intra-Golgi vesicle-mediated transport (biological process) GO:0007030 - Golgi organization (biological process) GO:0009860 - pollen tube growth (biological process) GO:0005801 - cis-Golgi network (cellular component) GO:0016020 - membrane (cellular component) GO:0017119 - Golgi transport complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function) GO:0042803 - protein homodimerization activity (molecular function)
InterPro domains	IPR007265 - Conserved oligomeric Golgi complex, subunit 3

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0054273.1 conserved oligomeric Golgi complex subunit 3 [Cucumis melo var. makuwa]

1.2e-62

95.45

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

TYK14988.1 conserved oligomeric Golgi complex subunit 3 [Cucumis melo var. makuwa]

1.2e-62

95.45

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

XP_004142363.1 conserved oligomeric Golgi complex subunit 3 isoform X1 [Cucumis sativus]

6.2e-62

93.94

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLG+PKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAV+ERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

XP_008460560.1 PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis melo]

1.2e-62

95.45

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

XP_038892000.1 conserved oligomeric Golgi complex subunit 3 [Benincasa hispida]

2.8e-62

93.94

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAK APLGLPKSGAISKGYNFASTWEQNAPLTEQQQAA+ATLCHA+AERPFPVDLAQD I GKENALSISV+DT +EDSDAIEAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTV8 Component of oligomeric Golgi complex 3

3.0e-62

93.94

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLG+PKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAV+ERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

A0A1S3CCR3 Component of oligomeric Golgi complex 3

6.0e-63

95.45

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

A0A5A7UE42 Component of oligomeric Golgi complex 3

6.0e-63

95.45

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

A0A5D3CUT0 Component of oligomeric Golgi complex 3

6.0e-63

95.45

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQD IGGKENALSISV++TTN+DSDA+EAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

A0A6J1DZ07 Component of oligomeric Golgi complex 3

8.7e-62

93.94

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Query:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL
        MAAKA PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQD  G KENALSISV+DTTNEDSD IEAVLVNTNQFYKWFSDL
Subjt:  MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDL

Query:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        ESAMKSETEEKYHHYLNSLTDRIRTCD IL Q
Subjt:  ESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

SwissProt top hits

e value

%identity

Alignment

F4HQ84 Conserved oligomeric Golgi complex subunit 3

2.0e-47

74.44

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Query:  MAAKAA-PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSD
        MA KAA    LPKSGAISKGYNFASTWEQ+APLTEQQQAAI +L HAVAERPFP +L  + +   EN LS+SVEDT   DS AIEAVLVNTNQFYKWF+D
Subjt:  MAAKAA-PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSD

Query:  LESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        LESAMKSETEEKY HY+++LT+RI+TCD IL Q
Subjt:  LESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G73430.1 sec34-like family protein

1.4e-48

74.44

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Query:  MAAKAA-PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSD
        MA KAA    LPKSGAISKGYNFASTWEQ+APLTEQQQAAI +L HAVAERPFP +L  + +   EN LS+SVEDT   DS AIEAVLVNTNQFYKWF+D
Subjt:  MAAKAA-PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSD

Query:  LESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        LESAMKSETEEKY HY+++LT+RI+TCD IL Q
Subjt:  LESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

AT1G73430.2 sec34-like family protein

1.4e-48

74.44

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Query:  MAAKAA-PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSD
        MA KAA    LPKSGAISKGYNFASTWEQ+APLTEQQQAAI +L HAVAERPFP +L  + +   EN LS+SVEDT   DS AIEAVLVNTNQFYKWF+D
Subjt:  MAAKAA-PLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSD

Query:  LESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ
        LESAMKSETEEKY HY+++LT+RI+TCD IL Q
Subjt:  LESAMKSETEEKYHHYLNSLTDRIRTCDVILRQ

Sequences

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CDS sequence

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ATGGCTGCCAAGGCCGCCCCTCTTGGTTTACCGAAGTCCGGTGCAATTTCCAAGGGCTACAATTTTGCTTCTACCTGGGAACAGAATGCTCCTCTAACGGAGCAACAGCA
AGCAGCTATTGCGACACTCTGTCATGCCGTTGCTGAGCGACCTTTTCCCGTTGATTTGGCACAAGACAGTATAGGAGGTAAAGAAAATGCTTTGTCTATTTCGGTTGAGG
ATACCACCAACGAAGATTCTGATGCTATTGAAGCCGTTTTGGTCAACACCAATCAGTTCTACAAATGGTTTTCTGATCTTGAATCAGCCATGAAATCTGAGACAGAGGAG
AAATACCACCATTACTTGAATTCTTTAACAGATCGCATAAGAACGTGTGATGTTATACTTCGTCAGAATAAGAAAAACTCAATTGATCATCAAAAAGTTTAG

mRNA sequence

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Protein sequence

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MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDSIGGKENALSISVEDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEE
KYHHYLNSLTDRIRTCDVILRQNKKNSIDHQKV

HG10006974 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome