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HG10006975 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006975
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionmethyl-CpG-binding domain protein 4-like protein
Genome locationChr07:23844182..23844331
RNA-Seq ExpressionHG10006975
SyntenyHG10006975
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142362.1 methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucumis sativus]1.1e-1392.31Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW+EVEPKDHMLNYY DFLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
XP_008460559.1 PREDICTED: methyl-CpG-binding domain protein 4-like protein [Cucumis melo]1.1e-1392.31Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW+EVEPKDHMLNYY DFLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
XP_022969557.1 methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima]3.4e-1287.18Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
XP_023529473.1 methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo]3.4e-1287.18Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
XP_038892490.1 methyl-CpG-binding domain protein 4-like protein isoform X1 [Benincasa hispida]4.1e-1387.18Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYWNEV+PKDHMLNYY +FLHSI+HLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
TrEMBL top hitse value%identityAlignment
A0A1S3CCU6 methyl-CpG-binding domain protein 4-like protein5.2e-1492.31Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW+EVEPKDHMLNYY DFLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
A0A2Z6P5J2 Uncharacterized protein1.5e-0874.36Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +Y ADA+AIFCTG W+EVEP DHMLN Y DFL SIKH+L
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
A0A6J1DRX8 methyl-CpG-binding domain protein 4-like protein1.3e-0976.92Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW++V PKDHMLNYY +FL SIK  L
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
A0A6J1EZJ4 methyl-CpG-binding domain protein 4-like protein1.7e-1287.18Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
A0A6J1HWM5 methyl-CpG-binding domain protein 4-like protein isoform X11.7e-1287.18Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
        +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL
SwissProt top hitse value%identityAlignment
O95243 Methyl-CpG-binding domain protein 43.6e-0450Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
        +YG D++ IFC   W +V P+DH LN Y D+L
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
Q0IGK1 Methyl-CpG-binding domain protein 4-like protein2.0e-0765.62Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
        +Y ADA+AIFC G W+ V+P DHMLNYY D+L
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
Q9Z2D7 Methyl-CpG-binding domain protein 43.6e-0450Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
        +YG D++ IFC   W +V P+DH LN Y D+L
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
Arabidopsis top hitse value%identityAlignment
AT3G07930.3 DNA glycosylase superfamily protein1.4e-0865.62Show/hide
Query:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL
        +Y ADA+AIFC G W+ V+P DHMLNYY D+L
Subjt:  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTA
TTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTA
TTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA
Protein sequenceShow/hide protein sequence
MRVKLKLIGDRYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL