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HG10006990 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006990
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUvrABC system protein C
Genome locationChr10:101158..101508
RNA-Seq ExpressionHG10006990
SyntenyHG10006990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590523.1 hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1356.25Show/hide
Query:  DKSNIYND----ERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLKK-LKNNCLLPSPSR-RRTTFIRL
        D  NIYN     + +SES LRY YSDQG    YS  +  EKRQLFL+SYQ C KKSV   IN  LLKIKR+IW++LK  L ++C L + SR RR   +RL
Subjt:  DKSNIYND----ERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLKK-LKNNCLLPSPSR-RRTTFIRL

Query:  H--IHSSLSCFS
        H  IH SLSCFS
Subjt:  H--IHSSLSCFS

KGN66002.1 hypothetical protein Csa_007656 [Cucumis sativus]1.7e-1446.09Show/hide
Query:  MGLNLIVHSDEDDKSNIYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLC------------RKKSVAHNINNPLLKIKRLIWIKLKKLK
        MG NL++H  +D+    Y  E          Y D+    RYS+RM REKRQ+FL+SY+              +++SV HNI   LLKIKR+IW++L KLK
Subjt:  MGLNLIVHSDEDDKSNIYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLC------------RKKSVAHNINNPLLKIKRLIWIKLKKLK

Query:  ----NNCLLPSPSR---RRTTFIRLHIH
            N+C LPSPSR   RRTTF RLHIH
Subjt:  ----NNCLLPSPSR---RRTTFIRLHIH

PON75840.1 hypothetical protein TorRG33x02_244540 [Trema orientale]3.7e-0448.53Show/hide
Query:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK------KLKNNCLLPSPSRRRTTFIRL
        M  EKRQLFL+SYQ CRKKS+   I   L+++KR+IW++LK      KL    L    S RR  F+RL
Subjt:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK------KLKNNCLLPSPSRRRTTFIRL

XP_021282816.1 uncharacterized protein LOC110415473 [Herrania umbratica]2.8e-0447.44Show/hide
Query:  EKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK---KLKNNCL--LPSPSRRRTTFIRL----HIHSSLS-CF
        EKRQLFL+SYQ CRK+S+A  I   L+++KR++W +L+   KL+ + L  L     RR  FIRL    H HS  S CF
Subjt:  EKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK---KLKNNCL--LPSPSRRRTTFIRL----HIHSSLS-CF

XP_031247927.1 uncharacterized protein LOC116105660 [Pistacia vera]5.6e-0544.58Show/hide
Query:  EKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKL------KKLKNNCLLPSPSRRRTTFIRL----------HIHSSLSC
        EKRQLFL+SYQ CRKKSV+  I   L+++KR++W+KL      +KL  + L  S + RR  F+RL          H H S SC
Subjt:  EKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKL------KKLKNNCLLPSPSRRRTTFIRL----------HIHSSLSC

TrEMBL top hitse value%identityAlignment
A0A061F445 UvrABC system protein C1.8e-0446.91Show/hide
Query:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK---KLKNNCL--LPSPSRRRTTFIRL----HIHSSLS-CF
        M  EKRQLFL+SYQ CRK+S+A  I   L+++KR++W +L+   KL+ + L  L     RR  FIRL    H HS  S CF
Subjt:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK---KLKNNCL--LPSPSRRRTTFIRL----HIHSSLS-CF

A0A0A0LYW0 Uncharacterized protein8.5e-1546.09Show/hide
Query:  MGLNLIVHSDEDDKSNIYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLC------------RKKSVAHNINNPLLKIKRLIWIKLKKLK
        MG NL++H  +D+    Y  E          Y D+    RYS+RM REKRQ+FL+SY+              +++SV HNI   LLKIKR+IW++L KLK
Subjt:  MGLNLIVHSDEDDKSNIYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLC------------RKKSVAHNINNPLLKIKRLIWIKLKKLK

Query:  ----NNCLLPSPSR---RRTTFIRLHIH
            N+C LPSPSR   RRTTF RLHIH
Subjt:  ----NNCLLPSPSR---RRTTFIRLHIH

A0A2P5D8B2 Uncharacterized protein1.8e-0448.53Show/hide
Query:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK------KLKNNCLLPSPSRRRTTFIRL
        M  EKRQLFL+SYQ CRKKS+   I   L+++KR+IW++LK      KL    L    S RR  F+RL
Subjt:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK------KLKNNCLLPSPSRRRTTFIRL

A0A2P5DRC2 Uncharacterized protein1.8e-0448.53Show/hide
Query:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK------KLKNNCLLPSPSRRRTTFIRL
        M  EKRQLFL+SYQ CRKKS+   I   L+++KR+IW++LK      KL    L    S RR  F+RL
Subjt:  MQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK------KLKNNCLLPSPSRRRTTFIRL

A0A7N0U7V7 Uncharacterized protein3.0e-0436.89Show/hide
Query:  IYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLKKLKNNCLLPSPS----RRRTTFIRLHIHSSL
        ++   R+++    YCY +Q       + M  EKRQLFL+SYQ  RKKSV+  I    +K+K++I  +L+  K    L   +    RRR  F+RL ++S +
Subjt:  IYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLKKLKNNCLLPSPS----RRRTTFIRLHIHSSL

Query:  SCF
        SCF
Subjt:  SCF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G26731.1 unknown protein2.1e-0540Show/hide
Query:  EKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK---KLKNNCLLPSPS----RRRTTFIRLHIHSSLSCF
        EKRQLFL+SYQ  RK+S A  ++  + ++KR++  +L+   KLK        S    RRR  F  LH+H    CF
Subjt:  EKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLK---KLKNNCLLPSPS----RRRTTFIRLHIHSSLSCF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTGAATTTGATTGTCCATTCAGATGAGGATGATAAGAGTAATATTTACAATGATGAGCGAAAAAGTGAATCGGAGTTGCGATATTGTTATTCAGATCAGGGCCA
GGGGCGGCGCTACTCATTGAGGATGCAGCGGGAGAAGAGGCAATTATTTCTGAAGAGTTATCAGTTGTGCAGGAAGAAAAGTGTGGCCCACAACATAAACAACCCTCTTC
TCAAAATCAAGAGACTTATATGGATCAAGCTTAAGAAACTCAAGAATAACTGCTTGCTTCCTTCACCTTCACGTAGAAGAACAACATTTATTCGCCTCCATATTCACTCA
TCTCTCTCTTGTTTCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTGAATTTGATTGTCCATTCAGATGAGGATGATAAGAGTAATATTTACAATGATGAGCGAAAAAGTGAATCGGAGTTGCGATATTGTTATTCAGATCAGGGCCA
GGGGCGGCGCTACTCATTGAGGATGCAGCGGGAGAAGAGGCAATTATTTCTGAAGAGTTATCAGTTGTGCAGGAAGAAAAGTGTGGCCCACAACATAAACAACCCTCTTC
TCAAAATCAAGAGACTTATATGGATCAAGCTTAAGAAACTCAAGAATAACTGCTTGCTTCCTTCACCTTCACGTAGAAGAACAACATTTATTCGCCTCCATATTCACTCA
TCTCTCTCTTGTTTCTCATGA
Protein sequenceShow/hide protein sequence
MGLNLIVHSDEDDKSNIYNDERKSESELRYCYSDQGQGRRYSLRMQREKRQLFLKSYQLCRKKSVAHNINNPLLKIKRLIWIKLKKLKNNCLLPSPSRRRTTFIRLHIHS
SLSCFS