CuGenDBv2

Gene ID	HG10007032
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	single-stranded DNA-binding protein, mitochondrial
Genome location	Chr10:568201..569025
RNA-Seq Expression	HG10007032
Synteny	HG10007032
Gene Ontology terms	GO:0001732 - formation of cytoplasmic translation initiation complex (biological process) GO:0006264 - mitochondrial DNA replication (biological process) GO:0051096 - positive regulation of helicase activity (biological process) GO:0005852 - eukaryotic translation initiation factor 3 complex (cellular component) GO:0016282 - eukaryotic 43S preinitiation complex (cellular component) GO:0033290 - eukaryotic 48S preinitiation complex (cellular component) GO:0042645 - mitochondrial nucleoid (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR000424 - Primosome PriB/single-strand DNA-binding IPR011344 - Single-stranded DNA-binding protein IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024011.1 Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]

5.9e-60

89.23

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLWLST AS S IDVEKNNG EEEYD+LFNDKI+ QPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

XP_022961505.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita moschata]

1.7e-59

88.46

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLWLST AS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

XP_022968788.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima]

3.5e-60

89.23

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLWLSTGAS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

XP_023516115.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita pepo subsp. pepo]

1.7e-59

88.46

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLWLST AS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

XP_038878660.1 single-stranded DNA-binding protein, mitochondrial [Benincasa hispida]

2.0e-60

89.23

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNGEE-EYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTS KLWLST ASESD+DVEKNNGEE EYD+ FN+K++ QPQGVDPRRGWGYRGVHKAIICG+VGQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNGEE-EYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLPRPAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQI7 single-stranded DNA-binding protein, mitochondrial

6.0e-50

76.15

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Query:  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VAS QTSSK WLSTGASESD+D+EKN+ G+++YD   N   + QPQGVDP RGWGYRGVHKAIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRIV+
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
         + LP+PAQWHRIAVHNE LGAYAVQ++ K
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

A0A5D3CEJ3 Single-stranded DNA-binding protein

6.0e-50

76.15

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Query:  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VAS QTSSK WLSTGASESD+D+EKN+ G+++YD   N   + QPQGVDP RGWGYRGVHKAIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRIV+
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
         + LP+PAQWHRIAVHNE LGAYAVQ++ K
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

A0A6J1C1K4 single-stranded DNA-binding protein, mitochondrial

4.2e-59

86.92

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Query:  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLW STG SESD DVEKNN  EEEYD++F+DK++ QPQGVDPRRGWG+RGVHKAIICG+VGQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

A0A6J1HCE9 single-stranded DNA-binding protein, mitochondrial

8.4e-60

88.46

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLWLST AS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

A0A6J1HZ42 single-stranded DNA-binding protein, mitochondrial

1.7e-60

89.23

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Query:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
        VASRQTSSKLWLSTGAS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVE
Subjt:  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE

Query:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        AKDLP+PAQWHRIAVHNEPLGAYAVQQ+VK
Subjt:  AKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

SwissProt top hits

e value

%identity

Alignment

Q04837 Single-stranded DNA-binding protein, mitochondrial

2.2e-04

29.87

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Query:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        R +++  + G+VGQ PV + +     +TIF++ T  M+   D  + +  D+ +   WHRI+V    L   A Q + K
Subjt:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

Q5RDQ0 Single-stranded DNA-binding protein, mitochondrial

1.7e-04

29.87

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Query:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        R +++  + G+VGQ PV + +     +TIF++ T  M+   D  + +  D+ +   WHRI+V    L   A Q + K
Subjt:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

Q84J78 Single-stranded DNA-binding protein, mitochondrial

1.3e-41

61.42

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Query:  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKD
        S +  SK W STG  +  +       EE+++E   ++ + QP GVDPR+GWG+RGVH+AIICGKVGQAP+QKILR+GR +TIFTVGTGGMFDQR+V A +
Subjt:  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKD

Query:  LPRPAQWHRIAVHNEPLGAYAVQQIVK
         P+PAQWHRIAVHNE LG+YAVQ++ K
Subjt:  LPRPAQWHRIAVHNEPLGAYAVQQIVK

Q95KK4 Single-stranded DNA-binding protein, mitochondrial

3.7e-04

29.87

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Query:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        R +++  + G+VGQ PV + +     +TIF++ T  M+   D    +  D+ +   WHRI+V    L   A Q + K
Subjt:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

Q9CYR0 Single-stranded DNA-binding protein, mitochondrial

1.3e-04

29.87

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Query:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK
        R +++  + G+VGQ PV + +     +TIF++ T  M+   D  + +  D+ +   WHRI+V    L   A Q + K
Subjt:  RGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVK

Arabidopsis top hits

e value

%identity

Alignment

AT3G18580.1 Nucleic acid-binding, OB-fold-like protein

1.9e-11

40.26

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Query:  GVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR------PAQWHRIAVHNEPLGAYAVQQI
        G+ KAI+ G+VGQ P+QK L+ GR +T+F+VGTGG+ + R     + PR        QWHR++V+ E L    ++ +
Subjt:  GVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR------PAQWHRIAVHNEPLGAYAVQQI

AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein

9.2e-43

61.42

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Query:  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKD
        S +  SK W STG  +  +       EE+++E   ++ + QP GVDPR+GWG+RGVH+AIICGKVGQAP+QKILR+GR +TIFTVGTGGMFDQR+V A +
Subjt:  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKD

Query:  LPRPAQWHRIAVHNEPLGAYAVQQIVK
         P+PAQWHRIAVHNE LG+YAVQ++ K
Subjt:  LPRPAQWHRIAVHNEPLGAYAVQQIVK

Sequences

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CDS sequence

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ATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAA
CAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAA
TTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAA
GCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAAGTATGATTTGAACTTCTC
ATAA

mRNA sequence

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Protein sequence

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MDWLILERLVVVASRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVE
AKDLPRPAQWHRIAVHNEPLGAYAVQQIVKKYDLNFS

HG10007032 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome