CuGenDBv2

Gene ID	HG10007069
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SOSS complex subunit B-like protein
Genome location	Chr10:959913..960929
RNA-Seq Expression	HG10007069
Synteny	HG10007069
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]

2.3e-60

96.72

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQN VNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDT NSNKY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]

2.3e-60

96.72

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQN VNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDT NSNKY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

2.9e-58

93.44

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQNNVNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDTTNS KY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]

3.7e-58

92.62

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQNNVNTQFIVL KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDTTNS KY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

1.4e-60

97.54

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQNNVNTQFIVL KGMT MEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDTTNSNKY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LW03 Uncharacterized protein

1.1e-60

96.72

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQN VNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDT NSNKY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

A0A1S3BPN4 SOSS complex subunit B homolog

1.1e-60

96.72

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQN VNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDT NSNKY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

A0A5D3CIR3 SOSS complex subunit B-like protein

1.1e-60

96.72

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQN VNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDT NSNKY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

A0A6J1HAL0 SOSS complex subunit B homolog

1.4e-58

93.44

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQNNVNTQFIVL KGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDTTNS KY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

A0A6J1HZ66 SOSS complex subunit B homolog

1.2e-57

91.8

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQNNVNTQFIVL KGMTTM+GQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPNMSEIHWVPDT+NS KY
Subjt:  FVETPNMSEIHWVPDTTNSNKY

SwissProt top hits

e value

%identity

Alignment

A5D7P8 SOSS complex subunit B2

2.7e-11

38.68

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Query:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  + N+N  FIVL  G  T        +S  VAD+T ++   +W +   +++P DIIRLT G  S  +   L L  G+ G+++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

A6QLK2 SOSS complex subunit B1

5.5e-12

38.68

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Query:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  + N+N  FIVL  G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q3SWT1 SOSS complex subunit B1

5.5e-12

38.68

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Query:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  + N+N  FIVL  G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q8R2Y9 SOSS complex subunit B1

5.5e-12

38.68

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Query:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  + N+N  FIVL  G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q9BQ15 SOSS complex subunit B1

5.5e-12

38.68

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Query:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  + N+N  FIVL  G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

4.4e-41

61.48

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Query:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        M + LKD+VPAAQNN++T+FI+L K  ++       C +L ADETAAVH QLWGDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + 
Subjt:  MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTTNSNKY
        FVETPN+SEI W+PD  N  +Y
Subjt:  FVETPNMSEIHWVPDTTNSNKY

Sequences

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CDS sequence

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ATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAACGTGAATACACAATTCATAGTTTTAGTGAAAGGCATGACAACAATGGAAGGACAAAACAAG
GCATGCCAATCTCTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTCGTTGAGCCGAGCGACATTATACGCTTGACGAAT
GGGATATTTTCGTACAGCCGAAACAATAATCTGGTGTTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCA
AATATGAGTGAAATCCATTGGGTTCCAGACACCACTAACTCCAACAAATATGACGTTATTGACTACTTTTATTGA

mRNA sequence

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Protein sequence

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MMIPLKDLVPAAQNNVNTQFIVLVKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETP
NMSEIHWVPDTTNSNKYDVIDYFY

HG10007069 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome