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HG10007072 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007072
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionER membrane protein complex subunit 6
Genome locationChr10:989745..993216
RNA-Seq ExpressionHG10007072
SyntenyHG10007072
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0072546 - ER membrane protein complex (cellular component)
InterPro domainsIPR008504 - ER membrane protein complex subunit 6
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597582.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4191.26Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
KAG7029026.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-4283.47Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMKLYADRAFLNMKKFRIRH
        GLM       FL+ KK R RH
Subjt:  GLMKLYADRAFLNMKKFRIRH
XP_022137968.1 ER membrane protein complex subunit 6 [Momordica charantia]2.6e-4293.2Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSSAASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITSL LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
XP_022937062.1 ER membrane protein complex subunit 6 [Cucurbita moschata]3.8e-4191.26Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
XP_022972030.1 ER membrane protein complex subunit 6 [Cucurbita maxima]2.2e-4192.23Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
TrEMBL top hitse value%identityAlignment
A0A0A0LZ06 ER membrane protein complex subunit 67.0e-4174.26Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTGFIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMKLYADRAFLNMKKFRIRHCSHI------LSPNA
        GLM          +  +  RHCS         SPNA
Subjt:  GLMKLYADRAFLNMKKFRIRHCSHI------LSPNA
A0A1S3BQB0 ER membrane protein complex subunit 63.1e-4191.26Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS AS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITS+ALAAKA FS HSYFES NQILLDGFL 
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
A0A6J1CBS9 ER membrane protein complex subunit 61.3e-4293.2Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSSAASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITSL LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
A0A6J1FFH8 ER membrane protein complex subunit 61.8e-4191.26Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
A0A6J1I7D9 ER membrane protein complex subunit 61.1e-4192.23Show/hide
Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM
SwissProt top hitse value%identityAlignment
Q3ZCG8 ER membrane protein complex subunit 63.7e-0739.02Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA    + YF+S   +   G + GL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
Q68EU8 ER membrane protein complex subunit 61.8e-0640Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF+S   +   G + GL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
Q6GLC5 ER membrane protein complex subunit 61.4e-0640Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF+S   +   G + GL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
Q9BV81 ER membrane protein complex subunit 62.2e-0739.02Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA    + YF+S   +   G + GL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
Q9CQW0 ER membrane protein complex subunit 62.2e-0739.02Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA    + YF+S   +   G + GL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
Arabidopsis top hitse value%identityAlignment
AT5G49540.1 Rab5-interacting family protein3.2e-3066.67Show/hide
Query:  ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM
        +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+VM ITS+ L AKA FS+  YF+SWN++L DGFL GLM
Subjt:  ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTA
CAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTG
CACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAAATTGTATGCTGACCGTGCT
TTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACT
CGAGACTGGGAATTCCAAACAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTA
CAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTG
CACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAAATTGTATGCTGACCGTGCT
TTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACT
CGAGACTGGGAATTCCAAACAGTAA
Protein sequenceShow/hide protein sequence
MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMKLYADRA
FLNMKKFRIRHCSHILSPNAGRNSNSRVAAAFCTIRLETGNSKQ