; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10007084 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007084
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNuclear transcription factor Y subunit B-4
Genome locationChr10:1114397..1114765
RNA-Seq ExpressionHG10007084
SyntenyHG10007084
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050890.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]5.3e-4679.83Show/hide
Query:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH
        +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENRRTLNGDDICWAF S GLDN+AE+ +KYLLK+REVERIK  
Subjt:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH

Query:  QYECKITQQLQEEEDEDDE
        +Y+CKITQ+L  ++D+D E
Subjt:  QYECKITQQLQEEEDEDDE

KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4071.31Show/hide
Query:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI
        MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH++NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R+VERI
Subjt:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI

Query:  KAHQYECKITQQLQEEEDEDDE
         A Q++  I  + Q+ + E ++
Subjt:  KAHQYECKITQQLQEEEDEDDE

XP_008451142.1 PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo]3.4e-4578.99Show/hide
Query:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH
        +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENRRTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  
Subjt:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH

Query:  QYECKITQQLQEEEDEDDE
        +Y+CKITQ+L  ++D+D E
Subjt:  QYECKITQQLQEEEDEDDE

XP_022961414.1 nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]3.3e-4073.11Show/hide
Query:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI
        MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH++NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R+VERI
Subjt:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI

Query:  KAHQYECKITQQLQEEEDE
         A Q++  I  + Q+ + E
Subjt:  KAHQYECKITQQLQEEEDE

XP_022968852.1 nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]5.7e-4071.31Show/hide
Query:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI
        MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH++NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R++ERI
Subjt:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI

Query:  KAHQYECKITQQLQEEEDEDDE
         A Q++  I ++ QE   E ++
Subjt:  KAHQYECKITQQLQEEEDEDDE

TrEMBL top hitse value%identityAlignment
A0A1S3BRX1 nuclear transcription factor Y subunit B-41.7e-4578.99Show/hide
Query:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH
        +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENRRTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  
Subjt:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH

Query:  QYECKITQQLQEEEDEDDE
        +Y+CKITQ+L  ++D+D E
Subjt:  QYECKITQQLQEEEDEDDE

A0A5A7U6S7 Nuclear transcription factor Y subunit B-42.6e-4679.83Show/hide
Query:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH
        +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENRRTLNGDDICWAF S GLDN+AE+ +KYLLK+REVERIK  
Subjt:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH

Query:  QYECKITQQLQEEEDEDDE
        +Y+CKITQ+L  ++D+D E
Subjt:  QYECKITQQLQEEEDEDDE

A0A5D3CG76 Nuclear transcription factor Y subunit B-41.7e-4578.99Show/hide
Query:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH
        +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENRRTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  
Subjt:  HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH

Query:  QYECKITQQLQEEEDEDDE
        +Y+CKITQ+L  ++D+D E
Subjt:  QYECKITQQLQEEEDEDDE

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like1.6e-4073.11Show/hide
Query:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI
        MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH++NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R+VERI
Subjt:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI

Query:  KAHQYECKITQQLQEEEDE
         A Q++  I  + Q+ + E
Subjt:  KAHQYECKITQQLQEEEDE

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like2.7e-4071.31Show/hide
Query:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI
        MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH++NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R++ERI
Subjt:  MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERI

Query:  KAHQYECKITQQLQEEEDEDDE
         A Q++  I ++ QE   E ++
Subjt:  KAHQYECKITQQLQEEEDEDDE

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-42.7e-2965.59Show/hide
Query:  DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVER
        DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA EFISFVT EA+++CH+ENR+T+NGDDI WA  + GLDN+A+   ++L K+RE ER
Subjt:  DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVER

O23310 Nuclear transcription factor Y subunit B-37.7e-2458.62Show/hide
Query:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE
        LPIANV RIMKK LP  AKISK+AK+T+QEC +EFISF+T EA+ +C +E R+T+NGDD+ WA  + G +++ E    YL K+REVE
Subjt:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE

O82248 Nuclear transcription factor Y subunit B-52.6e-2760.64Show/hide
Query:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY
        LPIANVGRIMK ILP  AK+SKEAK+TMQEC +EFISFVT EA+ +CH+E R+T+NGDDICWA  + G D++A    KYL ++R +E  K + +
Subjt:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY

Q9FGJ3 Nuclear transcription factor Y subunit B-22.7e-2459.77Show/hide
Query:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE
        LPIANV RIMKK LP  AKISK+AK+TMQEC +EFISFVT EA+ +C +E R+T+NGDD+ WA  + G +++ E    YL +FRE+E
Subjt:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE

Q9SIT9 Nuclear transcription factor Y subunit B-77.7e-2447.46Show/hide
Query:  DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKA
        ++N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC +EFISFVT EA+ +C +E R+T+NGDDI WA  + G +++      YL K+R+ E  K 
Subjt:  DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKA

Query:  H----QYECKITQQLQEE
        +    Q + +  QQ+Q++
Subjt:  H----QYECKITQQLQEE

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B42.0e-3065.59Show/hide
Query:  DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVER
        DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA EFISFVT EA+++CH+ENR+T+NGDDI WA  + GLDN+A+   ++L K+RE ER
Subjt:  DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVER

AT2G13570.1 nuclear factor Y, subunit B75.5e-2547.46Show/hide
Query:  DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKA
        ++N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC +EFISFVT EA+ +C +E R+T+NGDDI WA  + G +++      YL K+R+ E  K 
Subjt:  DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKA

Query:  H----QYECKITQQLQEE
        +    Q + +  QQ+Q++
Subjt:  H----QYECKITQQLQEE

AT2G47810.1 nuclear factor Y, subunit B51.8e-2860.64Show/hide
Query:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY
        LPIANVGRIMK ILP  AK+SKEAK+TMQEC +EFISFVT EA+ +CH+E R+T+NGDDICWA  + G D++A    KYL ++R +E  K + +
Subjt:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY

AT4G14540.1 nuclear factor Y, subunit B35.5e-2558.62Show/hide
Query:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE
        LPIANV RIMKK LP  AKISK+AK+T+QEC +EFISF+T EA+ +C +E R+T+NGDD+ WA  + G +++ E    YL K+REVE
Subjt:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE

AT5G47640.1 nuclear factor Y, subunit B21.9e-2559.77Show/hide
Query:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE
        LPIANV RIMKK LP  AKISK+AK+TMQEC +EFISFVT EA+ +C +E R+T+NGDD+ WA  + G +++ E    YL +FRE+E
Subjt:  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAA
GACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGG
CTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACT
CAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAA
GACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGG
CTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACT
CAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA
Protein sequenceShow/hide protein sequence
MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKIT
QQLQEEEDEDDE