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HG10007202 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007202
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr10:2486572..2487968
RNA-Seq ExpressionHG10007202
SyntenyHG10007202
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]2.7e-1140.87Show/hide
Query:  VGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCS
        V R RWS P + SFK+N DAA    +N+VG+GAII DS G V+V +   +    +   AEA+A+L GL++     L+   +E+DA+++V +I   S  C+
Subjt:  VGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCS

Query:  PHGAILNEIRCLLSL
          G +L++IR L SL
Subjt:  PHGAILNEIRCLLSL

XP_024200343.1 uncharacterized protein LOC112203645 [Rosa chinensis]9.5e-0934.55Show/hide
Query:  RWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGA
        +W PP   + KLN DAA      K GLG ++ D  G +       LP      A EALA+ HGL L R+    N+ VE+D+  ++  + +  +  S  G 
Subjt:  RWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGA

Query:  ILNEIRCLLS
        +L++I+CL S
Subjt:  ILNEIRCLLS

XP_030477911.1 uncharacterized protein LOC115694948 [Cannabis sativa]1.2e-0835.78Show/hide
Query:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI
        WSPP+   FKLN+DAA      K+G+GAI+ D  G+VV   S  +     S   EA +L H L    Q +L   H+E DA  +   +   +   S   ++
Subjt:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI

Query:  LNEIRCLLS
        + ++RCLLS
Subjt:  LNEIRCLLS

XP_030495096.1 uncharacterized protein LOC115710883 [Cannabis sativa]3.3e-0935.78Show/hide
Query:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI
        WSPPA+  FKLN+DA       K+G+GAII D  G VV   S  +     S   EA +L H L    Q + +  H+E DA  +   +  N+   S    +
Subjt:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI

Query:  LNEIRCLLS
        + ++RCL+S
Subjt:  LNEIRCLLS

XP_030502298.1 uncharacterized protein LOC115717449 [Cannabis sativa]1.2e-0835.78Show/hide
Query:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI
        WSPP+   FKLN+DAA      K+G+GAI+ D  G+VV   S  +     S   EA +L H L    Q +L   H+E DA  +   +   +   S   ++
Subjt:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI

Query:  LNEIRCLLS
        + ++RCLLS
Subjt:  LNEIRCLLS

TrEMBL top hitse value%identityAlignment
A0A5C7HA98 CCHC-type domain-containing protein1.3e-1140.87Show/hide
Query:  VGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCS
        V R RWS P + SFK+N DAA    +N+VG+GAII DS G V+V +   +    +   AEA+A+L GL++     L+   +E+DA+++V +I   S  C+
Subjt:  VGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCS

Query:  PHGAILNEIRCLLSL
          G +L++IR L SL
Subjt:  PHGAILNEIRCLLSL

A0A803NTN0 Uncharacterized protein4.9e-1136.7Show/hide
Query:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI
        WSPP V  +KLN+DAA      K+G+GA++ D +G+V+   S        S   EA AL H L    Q +L   H+E DA  +   +  NS+  S    +
Subjt:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI

Query:  LNEIRCLLS
        + ++RCLLS
Subjt:  LNEIRCLLS

A0A803PNM1 Uncharacterized protein1.6e-0935.78Show/hide
Query:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI
        W+PPA+  FK+N+DA       K+G+GAII D  G VV   S  +     S   EA +L H L    QL+    H+E DA  +   I  N+   S    +
Subjt:  WSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAI

Query:  LNEIRCLLS
        + ++RCL+S
Subjt:  LNEIRCLLS

A0A803QH07 Uncharacterized protein1.6e-0931.25Show/hide
Query:  RIREEIVTTRTRSRRVDAASTHRRSKEEGSPLNFPSLRREERNYAAVGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRL
        RI   I+T  T   R  + + H  S+   +     S  +            W+PP +  FKLN+DAA      K+G+GAII    G+VV   S  +    
Subjt:  RIREEIVTTRTRSRRVDAASTHRRSKEEGSPLNFPSLRREERNYAAVGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRL

Query:  ESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAILNEIRCLLS
         S   EA AL H L  V Q +L   H+E DA  +   +       S    ++ +IRCLLS
Subjt:  ESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAILNEIRCLLS

A0A803QHU6 Uncharacterized protein9.3e-1039.09Show/hide
Query:  RWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGA
        +W PP    FKLN+DAA      K+G+GAII D +GVVV   S        S   EA AL H L    Q +L   H+E DA  +   +   S   S    
Subjt:  RWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGA

Query:  ILNEIRCLLS
        I+ ++RCLLS
Subjt:  ILNEIRCLLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAGCACTGCGTGGATAGATATCGTATTAGGGAGGAAATAGTAACTACAAGAACAAGAAGTAGACGCGTTGACGCAGCATCTACTCATCGCCGAAGCAAAGAGGA
AGGTTCACCTTTGAATTTTCCATCGCTGAGGCGGGAAGAGAGAAATTATGCAGCTGTGGGAAGAGATCGGTGGTCTCCTCCAGCTGTTAGAAGTTTTAAACTAAATATTG
ATGCTGCTTGTTGTCCGACGTCGAACAAAGTGGGGTTAGGGGCGATCATCTGCGACTCATCTGGGGTGGTGGTGGTTGTTTCATCTCATTTCCTCCCTTATCGGTTGGAG
TCCTTTGCGGCAGAGGCTTTGGCCCTTCTTCATGGATTGAAGCTGGTTCGACAATTAGAGTTGGTGAATGTTCATGTTGAAGCTGATGCTAAAGCGCTTGTCAAAGTCAT
TTATGAGAATAGTATGAAATGCTCTCCTCATGGTGCAATTTTAAATGAAATTAGGTGTTTGTTGTCTTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAGCACTGCGTGGATAGATATCGTATTAGGGAGGAAATAGTAACTACAAGAACAAGAAGTAGACGCGTTGACGCAGCATCTACTCATCGCCGAAGCAAAGAGGA
AGGTTCACCTTTGAATTTTCCATCGCTGAGGCGGGAAGAGAGAAATTATGCAGCTGTGGGAAGAGATCGGTGGTCTCCTCCAGCTGTTAGAAGTTTTAAACTAAATATTG
ATGCTGCTTGTTGTCCGACGTCGAACAAAGTGGGGTTAGGGGCGATCATCTGCGACTCATCTGGGGTGGTGGTGGTTGTTTCATCTCATTTCCTCCCTTATCGGTTGGAG
TCCTTTGCGGCAGAGGCTTTGGCCCTTCTTCATGGATTGAAGCTGGTTCGACAATTAGAGTTGGTGAATGTTCATGTTGAAGCTGATGCTAAAGCGCTTGTCAAAGTCAT
TTATGAGAATAGTATGAAATGCTCTCCTCATGGTGCAATTTTAAATGAAATTAGGTGTTTGTTGTCTTTGGATTGA
Protein sequenceShow/hide protein sequence
MSQHCVDRYRIREEIVTTRTRSRRVDAASTHRRSKEEGSPLNFPSLRREERNYAAVGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLE
SFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAILNEIRCLLSLD