CuGenDBv2

Gene ID	HG10007241
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	WD-40 repeat-containing protein MSI4
Genome location	Chr10:2895628..2895870
RNA-Seq Expression	HG10007241
Synteny	HG10007241
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK10086.1 WD-40 repeat-containing protein MSI4 [Cucumis melo var. makuwa]

2.4e-31

93.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSAT++ ASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

XP_004135716.2 WD-40 repeat-containing protein MSI4 [Cucumis sativus]

8.3e-32

94.67

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSATD+ ASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

XP_008450857.1 PREDICTED: WD-40 repeat-containing protein MSI4 [Cucumis melo]

2.4e-31

93.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSAT++ ASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

XP_022147703.1 WD-40 repeat-containing protein MSI4-like [Momordica charantia]

1.6e-30

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSATD AASKSPGSGGSIIKK GE NDKASDGPS+GPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

XP_038880551.1 WD-40 repeat-containing protein MSI4-like [Benincasa hispida]

4.9e-32

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSATD AASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWU1 WD_REPEATS_REGION domain-containing protein

4.0e-32

94.67

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSATD+ ASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

A0A1S3BPL6 WD-40 repeat-containing protein MSI4

1.2e-31

93.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSAT++ ASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

A0A5D3CI55 WD-40 repeat-containing protein MSI4

1.2e-31

93.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSAT++ ASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

A0A6J1D211 WD-40 repeat-containing protein MSI4-like

7.6e-31

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITTSATD AASKSPGSGGSIIKK GE NDKASDGPS+GPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

A0A6J1HUE9 WD-40 repeat-containing protein MSI4

1.4e-29

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDKLVVLWSIQDHITT+A+D+AASKSPGSGGSIIKK GEANDK ++GPSIGPRGVYHGHEDTVEDVTFCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

SwissProt top hits

e value

%identity

Alignment

O22607 WD-40 repeat-containing protein MSI4

6.4e-19

65.33

Show/hide

Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDK VVLWSIQDHITT  TDS +S      GSIIK+ GE  DK ++ P++GPRGVYHGHEDTVEDV F P+
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

Q9SU78 WD-40 repeat-containing protein MSI5

1.2e-17

61.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDK V+LW+IQDHIT + +D   SKSPGS     K+ GE +DK + GPS+GPRG+Y+GH+DTVEDV FCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G19520.1 Transducin family protein / WD-40 repeat family protein

4.6e-20

65.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDK VVLWSIQDHITT  TDS +S      GSIIK+ GE  DK ++ P++GPRGVYHGHEDTVEDV F P+
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

AT4G29730.1 nucleosome/chromatin assembly factor group C5

8.6e-19

61.33

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Query:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS
        L  GKDK V+LW+IQDHIT + +D   SKSPGS     K+ GE +DK + GPS+GPRG+Y+GH+DTVEDV FCPS
Subjt:  LMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPS

Sequences

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CDS sequence

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ATGCTACTTAATCTTATGGCAGGGAAGGACAAATTGGTTGTTTTATGGAGTATCCAGGACCACATAACAACTTCTGCCACAGACTCTGCTGCTTCAAAATCACCCGGATC
TGGAGGATCTATCATAAAGAAGCCTGGAGAGGCAAATGATAAAGCTTCTGATGGCCCTTCTATTGGGCCACGAGGAGTTTACCATGGCCACGAGGATACTGTTGAAGATG
TGACCTTCTGTCCGTCCAAGTAA

mRNA sequence

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Protein sequence

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MLLNLMAGKDKLVVLWSIQDHITTSATDSAASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPSK

HG10007241 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome