; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10007256 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007256
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S16
Genome locationChr10:3070972..3072672
RNA-Seq ExpressionHG10007256
SyntenyHG10007256
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]5.4e-6594.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSNGKDGNADS
        RPVDPLSGRF+TPEKPTD S+ KDGNADS
Subjt:  RPVDPLSGRFITPEKPTDGSNGKDGNADS

XP_022933978.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata]1.5e-6293.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSN-GKDGNADS
        RPVDPLSGRF TP+K TD SN  KDGNADS
Subjt:  RPVDPLSGRFITPEKPTDGSN-GKDGNADS

XP_023516386.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]1.1e-6292.25Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSNGKDGNADS
        R VDPLSGR ++PEKPTD S+ KDGNADS
Subjt:  RPVDPLSGRFITPEKPTDGSNGKDGNADS

XP_023529314.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]1.1e-6293.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRD+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSNG-KDGNADS
        RPVDPLSGRF TP+K TD SN  KDGNADS
Subjt:  RPVDPLSGRFITPEKPTDGSNG-KDGNADS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]9.2e-6595.35Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSNGKDGNADS
        R VDPLSGRF+TPEKPTD S+GKDG+ADS
Subjt:  RPVDPLSGRFITPEKPTDGSNGKDGNADS

TrEMBL top hitse value%identityAlignment
A0A1S3BQ70 30S ribosomal protein S162.1e-6290.77Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPE-KPTDGSNGKDGNADS
        RPVDPLSGRF+TPE KPTD SNG+ G+ADS
Subjt:  RPVDPLSGRFITPE-KPTDGSNGKDGNADS

A0A5D3CDW9 30S ribosomal protein S162.1e-6290.77Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPE-KPTDGSNGKDGNADS
        RPVDPLSGRF+TPE KPTD SNG+ G+ADS
Subjt:  RPVDPLSGRFITPE-KPTDGSNGKDGNADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial2.6e-6594.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSNGKDGNADS
        RPVDPLSGRF+TPEKPTD S+ KDGNADS
Subjt:  RPVDPLSGRFITPEKPTDGSNGKDGNADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like7.1e-6393.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSN-GKDGNADS
        RPVDPLSGRF TP+K TD SN  KDGNADS
Subjt:  RPVDPLSGRFITPEKPTDGSN-GKDGNADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like7.1e-6393.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSN-GKDGNADS
        RPVDPLSGRF TP+K TD SN  KDG+ADS
Subjt:  RPVDPLSGRFITPEKPTDGSN-GKDGNADS

SwissProt top hitse value%identityAlignment
A8LMC0 30S ribosomal protein S163.2e-2054.76Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P+D V R+L  A VLP
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP

O65686 30S ribosomal protein S16-1, chloroplastic1.8e-3153.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFI
         + V P++G  +
Subjt:  -RPVDPLSGRFI

Q16AN8 30S ribosomal protein S165.5e-2054.88Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWL  GAQP+D V R+L  AG+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV

Q5LNF2 30S ribosomal protein S163.2e-2055.42Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ +D V R+L  AGV+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial2.4e-5580.99Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSN
        RPVDP++GR++  E  T  +N
Subjt:  RPVDPLSGRFITPEKPTDGSN

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 161.3e-3253.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFI
         + V P++G  +
Subjt:  -RPVDPLSGRFI

AT5G56940.1 Ribosomal protein S16 family protein1.7e-5680.99Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFITPEKPTDGSN
        RPVDP++GR++  E  T  +N
Subjt:  RPVDPLSGRFITPEKPTDGSN

ATCG00050.1 ribosomal protein S164.5e-0935.8Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        +V++RL R G K +  YR++A D RY R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  +AG+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCT
AGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGC
AGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTC
ATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCT
AGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGC
AGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTC
ATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF
ITPEKPTDGSNGKDGNADS