CuGenDBv2

Gene ID	HG10007281
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase III subunit RPC4
Genome location	Chr10:3314035..3316879
RNA-Seq Expression	HG10007281
Synteny	HG10007281
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK10040.1 DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo var. makuwa]

6.4e-125

78.81

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSK
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN     +APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDGTLP+STSK
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSK

Query:  EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQP
        EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N SEQ+  SQ 
Subjt:  EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQP

Query:  RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIE
        RQKTCSMNELPSG                        F DF F+LTPVLK GQVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDVDSML+NIE
Subjt:  RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIE

Query:  DL
        DL
Subjt:  DL

XP_004144123.1 DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus]

1.9e-129

79.68

Show/hide

Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME +PPKNKTAAPRK+KFAPKAP RR+ KPEVKAE++EDADAAQARDLLKRFN +            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE  TYDENTTT AM+LGLLEENPE DV FLQLPPMVP+IKQSS+VE MG+ NSS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ++ SQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLKNIEDL
Subjt:  DSMLKNIEDL

XP_008450913.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo]

4.7e-128

79.35

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN +            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N S
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ+  SQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSML+NIEDL
Subjt:  DSMLKNIEDL

XP_022147557.1 DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia]

4.9e-125

78.71

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKN T A RKMKFAPKAP RR+ KPEVKAEI+E+ADAAQA+DLLKRFN + +          APTQVAFGSGGTS+TIRSYGI KAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLPSS SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASE  TYDE+ TTPAMDLGLLEENPET+VFFLQ+PPMVPV KQSSTVEGM AA+SS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQS+GS+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQDVAAINVEGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLK+IEDL
Subjt:  DSMLKNIEDL

XP_038878504.1 uncharacterized protein LOC120070724 [Benincasa hispida]

1.3e-133

82.26

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDT--------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTAAPRK+KFAPKAP RR+ KPEVKAEI+EDADAAQARDLLKRFN + + T        APTQVAFGSGGTSST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDT--------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE F YDENTTTPAMDLGLLEENPE DVFFLQLPPMVP++KQSSTVEG GAANS 
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQS+GSQPRQK C MNELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQDVAA+NVEGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DS+LKNIEDL
Subjt:  DSMLKNIEDL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWX7 Uncharacterized protein

9.3e-130

79.68

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME +PPKNKTAAPRK+KFAPKAP RR+ KPEVKAE++EDADAAQARDLLKRFN +            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE  TYDENTTT AM+LGLLEENPE DV FLQLPPMVP+IKQSS+VE MG+ NSS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ++ SQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLKNIEDL
Subjt:  DSMLKNIEDL

A0A1S3BPR1 DNA-directed RNA polymerase III subunit RPC4

2.3e-128

79.35

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN +            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N S
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ+  SQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSML+NIEDL
Subjt:  DSMLKNIEDL

A0A5A7UQN3 DNA-directed RNA polymerase III subunit RPC4

5.3e-125

77.1

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN +            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N S
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ+  SQ RQKTCSMNELPSGSM                        DF F+LTPVLK GQVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSML+NIEDL
Subjt:  DSMLKNIEDL

A0A5D3CFB5 DNA-directed RNA polymerase III subunit RPC4

3.1e-125

78.81

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSK
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN     +APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDGTLP+STSK
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSK

Query:  EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQP
        EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N SEQ+  SQ 
Subjt:  EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQP

Query:  RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIE
        RQKTCSMNELPSG                        F DF F+LTPVLK GQVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDVDSML+NIE
Subjt:  RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIE

Query:  DL
        DL
Subjt:  DL

A0A6J1D2P1 DNA-directed RNA polymerase III subunit rpc4

2.4e-125

78.71

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKN T A RKMKFAPKAP RR+ KPEVKAEI+E+ADAAQA+DLLKRFN + +          APTQVAFGSGGTS+TIRSYGI KAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAV--------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLPSS SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASE  TYDE+ TTPAMDLGLLEENPET+VFFLQ+PPMVPV KQSSTVEGM AA+SS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQS+GS+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQDVAAINVEGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLK+IEDL
Subjt:  DSMLKNIEDL

SwissProt top hits

e value

%identity

Alignment

P05423 DNA-directed RNA polymerase III subunit RPC4

2.6e-04

23.65

Show/hide

Query:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY
        E ++ FLQLP  +          P+  +    +G       E+ R ++  +  C++ +L  G +GKLL+ +SG V+L LG    ++  D           
Subjt:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY

Query:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML
          V+ G  C F Q++ ++ +   R     ++G +  + + +PD +S+L
Subjt:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

6.8e-05

22.67

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Query:  PRNEDGTLPSSTSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMV----------
        P+ ED  +     K   EP D      +  PLR  R   G P  ++  E                    L  L    E ++ FLQLP  +          
Subjt:  PRNEDGTLPSSTSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMV----------

Query:  PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGK
        P+  +  + +G       E+ R ++  + TC++ +L  G +GKLL+ +SG V+L LG    ++  D             V+ G  C F Q++ ++ +   
Subjt:  PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGK

Query:  R---CCIVGELSKRAILTPDVDSML
        R     ++G +  + + +P+ +S+L
Subjt:  R---CCIVGELSKRAILTPDVDSML

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

2.6e-04

23.65

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Query:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY
        + ++ FLQLP  +          PV  +    +G       E+ R ++  +  C++ +L  G +GKLL+ +SG V+L LG    ++  D           
Subjt:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY

Query:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML
          V+ G  C F Q++ ++ +   R     ++G +  + + +PD +S+L
Subjt:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

1.4e-32

34.37

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Query:  RKMKFAPKAPTRRL-LKPEVKAEISEDADAAQA-RDLLKRFNGNAVDT----APTQVAFGSGGTSSTIRSYGISKAGNKPRN------------------
        R+ +  P  P+RRL + P    E  ED +  +A R   +R  G    T    +  +VAF    +   IRS+G+ K  +KP +                  
Subjt:  RKMKFAPKAPTRRL-LKPEVKAEISEDADAAQA-RDLLKRFNGNAVDT----APTQVAFGSGGTSSTIRSYGISKAGNKPRN------------------

Query:  ---EDG----TLPSSTSKEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLE-ENPETDVFFLQLPPMVPVIKQS
           EDG       + T  +YVEPWDY  SYYP  LPLR+P SG+ + L++EEFGE ++   YDENT   A +LGL   ++ +  +F  ++P  +PV+KQ 
Subjt:  ---EDG----TLPSSTSKEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLE-ENPETDVFFLQLPPMVPVIKQS

Query:  STVEGMGAANSSEQSRG-SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIV
         T       +  E S G S P         LP G MGK+LVY+SGAVKLK+G        D  F          VS G       DV AI+++G+ C  +
Subjt:  STVEGMGAANSSEQSRG-SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIV

Query:  GELSKRAILTPDVDSMLKNIEDL
        G  +K   +TPDV+S+L    D+
Subjt:  GELSKRAILTPDVDSMLKNIEDL

AT5G09380.1 RNA polymerase III RPC4

3.2e-50

42.17

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISED-ADAAQARDLLKRFNGNAV-------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME  PP       RKMKFAPKAP +R+ KPEVK E+ ED +++AQA +LL+R N  ++           +QVA+  G  +ST          NK  N   
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISED-ADAAQARDLLKRFNGNAV-------DTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSK---EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAA
            STS    EY EPWDYYSYYP+TLP+RRPY+G+P+ L+ EEF +A     + E++   A +LGL+E++ E  +FF++L P VP+   S+  E +   
Subjt:  TLPSSTSK---EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAA

Query:  NSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT
          +  +      +KT  +  LP G MGKLLVY+SGAVK+KLG    E+ +D             VS G+   FAQDV  +N E K CC+VG++ K A+LT
Subjt:  NSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT

Query:  PDVDSMLKNIEDL
        PD+DS+LK+IE++
Subjt:  PDVDSMLKNIEDL

Sequences

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CDS sequence

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ATGGAGCACGATCCGCCCAAAAACAAGACAGCTGCTCCAAGGAAGATGAAATTTGCTCCAAAAGCACCTACTCGTCGGTTACTAAAACCTGAAGTCAAAGCAGAAATATC
AGAGGACGCTGATGCTGCTCAAGCCAGGGATTTACTAAAACGCTTCAATGGAAATGCGGTGGACACGGCACCTACACAAGTTGCATTTGGTTCTGGAGGTACATCAAGCA
CCATAAGATCATATGGTATTTCAAAAGCTGGCAATAAACCAAGAAATGAAGATGGAACTCTTCCGTCTAGTACAAGCAAGGAGTATGTAGAACCATGGGATTATTACAGT
TATTATCCTGTAACTCTTCCTTTGCGGAGACCATATTCAGGAAATCCAGATTCTCTAAACGAGGAAGAATTTGGAGAGGCTTCAGAAACCTTCACCTATGATGAAAATAC
AACTACTCCAGCAATGGATCTTGGTCTACTGGAGGAGAATCCAGAGACAGACGTCTTTTTTTTACAATTACCACCTATGGTTCCTGTGATAAAGCAATCTTCTACTGTAG
AAGGCATGGGGGCAGCCAACAGCTCAGAACAAAGTAGAGGCTCACAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGTAAATTGCTTGTG
TATAGGAGTGGCGCTGTCAAGTTAAAGCTTGGGCTATTCTTAGAGGAAATCTTTTGGGATTTTGCATTCGTTCTCACACCAGTTTTAAAATACGGGCAGGTTTCTTCTGG
AATGGATTGTGGCTTTGCACAAGACGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACT
CAATGTTAAAGAATATTGAGGACTTATAA

mRNA sequence

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Protein sequence

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MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNGNAVDTAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSKEYVEPWDYYS
YYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLV
YRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL

HG10007281 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome