; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10007353 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007353
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationChr10:4070573..4071025
RNA-Seq ExpressionHG10007353
SyntenyHG10007353
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]3.6e-3676.92Show/hide
Query:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE
        +ENVT+LV VTLRDG+EE  RFSNEEKDPMTSKELN+E YEVKIS ++L SGSKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HNLQE
Subjt:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE

Query:  YYVVLVRKGRVKDLPGV
        ++VVLVR G VKDLPGV
Subjt:  YYVVLVRKGRVKDLPGV

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]1.6e-3678.63Show/hide
Query:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE
        +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HN QE
Subjt:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE

Query:  YYVVLVRKGRVKDLPGV
        + VVLVR GRVKDLPGV
Subjt:  YYVVLVRKGRVKDLPGV

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]4.0e-4384.75Show/hide
Query:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ
        MNENVTELV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKIS T+LSSGSKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HNLQ
Subjt:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ

Query:  EYYVVLVRKGRVKDLPGV
        E+ VVLVR GRVKDLPGV
Subjt:  EYYVVLVRKGRVKDLPGV

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.6e-4485.59Show/hide
Query:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ
        MNENVT+LV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKISRT+LSSGSKGDLSVNFSTITPKN N ALRKV RV L S F+IIAYIP I HNLQ
Subjt:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ

Query:  EYYVVLVRKGRVKDLPGV
        E+  VLVR GRVKDLPGV
Subjt:  EYYVVLVRKGRVKDLPGV

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.3e-4383.9Show/hide
Query:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ
        MNENVTELV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKISRT+LSSGSKGDLS+NFSTITPK  N ALRKV RV L S F+I AYIP I HNLQ
Subjt:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ

Query:  EYYVVLVRKGRVKDLPGV
        EY+VVLVR  RVKDLP V
Subjt:  EYYVVLVRKGRVKDLPGV

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic7.8e-3778.63Show/hide
Query:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE
        +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HN QE
Subjt:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE

Query:  YYVVLVRKGRVKDLPGV
        + VVLVR GRVKDLPGV
Subjt:  YYVVLVRKGRVKDLPGV

A0A443Q5G0 30S ribosomal protein S12, chloroplastic5.2e-3375.21Show/hide
Query:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE
        +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HN QE
Subjt:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE

Query:  YYVVLVRKGRVKDLPGV
        + VVL RK   +DLPGV
Subjt:  YYVVLVRKGRVKDLPGV

A0A443Q5I9 30S ribosomal protein S12, chloroplastic4.7e-3474.36Show/hide
Query:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE
        +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HN QE
Subjt:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE

Query:  YYVVLVRKGRVKDLPGV
        + VVLVR GRVKDLPGV
Subjt:  YYVVLVRKGRVKDLPGV

A0A6A5N1Q8 Uncharacterized protein1.7e-3676.92Show/hide
Query:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE
        +ENVT+LV VTLRDG+EE  RFSNEEKDPMTSKELN+E YEVKIS ++L SGSKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HNLQE
Subjt:  NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQE

Query:  YYVVLVRKGRVKDLPGV
        ++VVLVR G VKDLPGV
Subjt:  YYVVLVRKGRVKDLPGV

A0A6J1F0L1 uncharacterized protein LOC1114383941.9e-4384.75Show/hide
Query:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ
        MNENVTELV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKIS T+LSSGSKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HNLQ
Subjt:  MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQ

Query:  EYYVVLVRKGRVKDLPGV
        E+ VVLVR GRVKDLPGV
Subjt:  EYYVVLVRKGRVKDLPGV

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic8.3e-2074.65Show/hide
Query:  TILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        T + SGSKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HN QE+ VVLVR GRVKDLPGV
Subjt:  TILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

A4QJV5 30S ribosomal protein S12-A, chloroplastic1.2e-1374.55Show/hide
Query:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Subjt:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

A4QJX7 30S ribosomal protein S12-B, chloroplastic1.4e-1467.19Show/hide
Query:  KGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        +G  +  +STITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Subjt:  KGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

Q1KVX0 30S ribosomal protein S12, chloroplastic6.8e-1450Show/hide
Query:  SSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGVILKFYSKTCKTK--KNQSQSLTNF
        S   +  + +   T+TPK  N ALRKV RV L S F++ AYIP I HNLQE+ VVLVR GRVKDLPGV       T  T   KN+ QS + +
Subjt:  SSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGVILKFYSKTCKTK--KNQSQSLTNF

Q5WLR7 30S ribosomal protein S128.9e-1451.16Show/hide
Query:  SKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        S  LN+     K S+T +SS  K  +     T+TPK  N ALRK  RV L ++ ++ AYIP I HNLQE+ VVL+R GRVKDLPGV
Subjt:  SKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein3.0e-0943.21Show/hide
Query:  EEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        EE      +R +     K  +    ST TPK  N A RK+ +V L +R  I A+IP   HN QE+  VL+R GRVKD PGV
Subjt:  EEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

ATCG00065.1 ribosomal protein S12A8.3e-1574.55Show/hide
Query:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Subjt:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

ATCG00905.1 ribosomal protein S12C8.3e-1574.55Show/hide
Query:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Subjt:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

ATCG01230.1 ribosomal protein S12B8.3e-1574.55Show/hide
Query:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Subjt:  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV

ATMG00980.1 Ribosomal protein S12/S23 family protein3.0e-0943.21Show/hide
Query:  EEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV
        EE      +R +     K  +    ST TPK  N A RK+ +V L +R  I A+IP   HN QE+  VL+R GRVKD PGV
Subjt:  EEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGAACGTGACTGAATTGGTCTCGGTCACTCTTCGAGATGGAATGGAAGAAGAGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
TGAGGAGCCGTATGAGGTGAAAATCTCACGTACGATTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCAAAAAACTCAAATTTTGCCT
TACGTAAAGTTGTCAGAGTATGCTTAATCTCGAGATTTAAAATCATTGCTTATATACCTAGTATTAGCCATAATTTACAAGAATATTATGTCGTCTTAGTAAGAAAGGGA
AGGGTTAAGGATTTACCCGGTGTGATTTTGAAATTTTATAGCAAAACTTGTAAAACAAAAAAAAATCAATCTCAATCACTAACCAATTTTTTTTCTTTTTTTTTTAAATG
CCTTTTGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAGAACGTGACTGAATTGGTCTCGGTCACTCTTCGAGATGGAATGGAAGAAGAGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
TGAGGAGCCGTATGAGGTGAAAATCTCACGTACGATTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCAAAAAACTCAAATTTTGCCT
TACGTAAAGTTGTCAGAGTATGCTTAATCTCGAGATTTAAAATCATTGCTTATATACCTAGTATTAGCCATAATTTACAAGAATATTATGTCGTCTTAGTAAGAAAGGGA
AGGGTTAAGGATTTACCCGGTGTGATTTTGAAATTTTATAGCAAAACTTGTAAAACAAAAAAAAATCAATCTCAATCACTAACCAATTTTTTTTCTTTTTTTTTTAAATG
CCTTTTGGGTTGA
Protein sequenceShow/hide protein sequence
MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKG
RVKDLPGVILKFYSKTCKTKKNQSQSLTNFFSFFFKCLLG