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HG10007386 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007386
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationChr10:4379986..4380360
RNA-Seq ExpressionHG10007386
SyntenyHG10007386
Gene Ontology termsGO:0048507 - meristem development (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040603.1 uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa]1.8e-2557.52Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSE-PVAPACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        ML+PN+VHLYV+VSRVGLD++LN++ F Q E+  Q I PDSE  V+   D +++V +N+Y DFRT+TDDEFEE DFDG E+++ S+    +DM+VIDSI 
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSE-PVAPACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EH+PI+  VVVDN
Subjt:  EHDPIIATVVVDN

KAA0041167.1 uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]1.4e-2557.26Show/hide
Query:  MNLMFSIEMLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTD---DEFEELDFDGREYDILSDIFI
        M  MFSI M + N+VHLYV+VSRV LD++LN+++F Q ED  Q I PDSE VA    D ++M+A+N   DFRT+ D   DEFEE DFDGRE+++ S+   
Subjt:  MNLMFSIEMLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTD---DEFEELDFDGREYDILSDIFI

Query:  ALDMNVIDSIREHDPIIATVVVDN
         +DM+VIDSIREHDPI+A +VVDN
Subjt:  ALDMNVIDSIREHDPIIATVVVDN

KAA0060519.1 uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa]1.9e-2758.41Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        M +PN+VHLYV+VSR+GLD+++N++ F Q ED  Q I PD+E VA +  D ++MVA+N+Y DF+T+TDDEFEE DFDGRE+++ S+    ++M+VIDSIR
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EHDPI++ VVVDN
Subjt:  EHDPIIATVVVDN

KAA0062731.1 uncharacterized protein E6C27_scaffold382G00620 [Cucumis melo var. makuwa]3.6e-2658.41Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        M +PN+VHLYV+VSRVGLD++LN++ F Q ED  Q I PD+E VA    + ++MVA+N+Y DFRT+T+D+FEE DFDG E+++ S+    +DM+VIDSIR
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EHDPI+  VVVDN
Subjt:  EHDPIIATVVVDN

KAA0066696.1 uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa]1.1e-2761.06Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        M +PN+VHLYV+VSRVGLD++LN++ F Q ED  Q I PDSE VA +  D ++MVA+N+Y DF+T+ DDEFEE DFDGRE+++  +    +DM+VIDSIR
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EHDPI+A VVVDN
Subjt:  EHDPIIATVVVDN

TrEMBL top hitse value%identityAlignment
A0A5A7THR5 Uncharacterized protein6.7e-2657.26Show/hide
Query:  MNLMFSIEMLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTD---DEFEELDFDGREYDILSDIFI
        M  MFSI M + N+VHLYV+VSRV LD++LN+++F Q ED  Q I PDSE VA    D ++M+A+N   DFRT+ D   DEFEE DFDGRE+++ S+   
Subjt:  MNLMFSIEMLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTD---DEFEELDFDGREYDILSDIFI

Query:  ALDMNVIDSIREHDPIIATVVVDN
         +DM+VIDSIREHDPI+A +VVDN
Subjt:  ALDMNVIDSIREHDPIIATVVVDN

A0A5A7V456 Uncharacterized protein9.3e-2858.41Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        M +PN+VHLYV+VSR+GLD+++N++ F Q ED  Q I PD+E VA +  D ++MVA+N+Y DF+T+TDDEFEE DFDGRE+++ S+    ++M+VIDSIR
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EHDPI++ VVVDN
Subjt:  EHDPIIATVVVDN

A0A5A7VAN3 Uncharacterized protein1.8e-2658.41Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        M +PN+VHLYV+VSRVGLD++LN++ F Q ED  Q I PD+E VA    + ++MVA+N+Y DFRT+T+D+FEE DFDG E+++ S+    +DM+VIDSIR
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAP-ACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EHDPI+  VVVDN
Subjt:  EHDPIIATVVVDN

A0A5D3C2N3 Uncharacterized protein8.7e-2657.52Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSE-PVAPACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        ML+PN+VHLYV+VSRVGLD++LN++ F Q E+  Q I PDSE  V+   D +++V +N+Y DFRT+TDDEFEE DFDG E+++ S+    +DM+VIDSI 
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSE-PVAPACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EH+PI+  VVVDN
Subjt:  EHDPIIATVVVDN

A0A5D3DVS6 Uncharacterized protein5.5e-2861.06Show/hide
Query:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR
        M +PN+VHLYV+VSRVGLD++LN++ F Q ED  Q I PDSE VA +  D ++MVA+N+Y DF+T+ DDEFEE DFDGRE+++  +    +DM+VIDSIR
Subjt:  MLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPAC-DGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIR

Query:  EHDPIIATVVVDN
        EHDPI+A VVVDN
Subjt:  EHDPIIATVVVDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCTGATGTTTTCAATTGAAATGCTTCTCCCGAATTTAGTACATTTATACGTTAGTGTGAGTAGGGTAGGCTTGGATGTAGATTTGAATACACAAACCTTTAGTCA
ATTTGAAGACTCAAATCAATCTATTGACCCTGATTCTGAACCAGTTGCACCAGCATGTGATGGTAAAGATATGGTGGCTAGCAATCAATATAGGGATTTTAGAACAAAAA
CAGATGATGAATTTGAGGAGTTGGACTTCGATGGTCGTGAATATGATATACTTTCAGATATATTTATTGCTTTAGATATGAATGTAATAGATAGCATTAGAGAACATGAC
CCGATTATAGCAACTGTAGTTGTTGACAATATCCAATTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACCTGATGTTTTCAATTGAAATGCTTCTCCCGAATTTAGTACATTTATACGTTAGTGTGAGTAGGGTAGGCTTGGATGTAGATTTGAATACACAAACCTTTAGTCA
ATTTGAAGACTCAAATCAATCTATTGACCCTGATTCTGAACCAGTTGCACCAGCATGTGATGGTAAAGATATGGTGGCTAGCAATCAATATAGGGATTTTAGAACAAAAA
CAGATGATGAATTTGAGGAGTTGGACTTCGATGGTCGTGAATATGATATACTTTCAGATATATTTATTGCTTTAGATATGAATGTAATAGATAGCATTAGAGAACATGAC
CCGATTATAGCAACTGTAGTTGTTGACAATATCCAATTTGTATAA
Protein sequenceShow/hide protein sequence
MNLMFSIEMLLPNLVHLYVSVSRVGLDVDLNTQTFSQFEDSNQSIDPDSEPVAPACDGKDMVASNQYRDFRTKTDDEFEELDFDGREYDILSDIFIALDMNVIDSIREHD
PIIATVVVDNIQFV