CuGenDBv2

Gene ID	HG10007394
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L30
Genome location	Chr10:4428843..4430196
RNA-Seq Expression	HG10007394
Synteny	HG10007394
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF2300088.1 hypothetical protein GH714_008128 [Hevea brasiliensis]

5.5e-50

73.43

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSG+YTLGYKTVLK+LRNSK             LE M +L     K  +  + KL++IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNG+NVDLGTACGKY+RVCCLSIIDPGDSDIIKSMP +
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

KAG6590249.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-49

74.83

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGE
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

XP_022157366.1 60S ribosomal protein L30 [Momordica charantia]

2.1e-49

74.83

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGE
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

5.5e-50

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGES
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

2.5e-50

75.69

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES

TrEMBL top hits

e value

%identity

Alignment

A0A059D972 Ribosomal_L7Ae domain-containing protein

1.3e-49

76.06

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKV VL+                           GKL++IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPG
        VGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPG
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPG

A0A6A6LIK2 Ribosomal_L7Ae domain-containing protein

2.6e-50

73.43

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSG+YTLGYKTVLK+LRNSK             LE M +L     K  +  + KL++IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNG+NVDLGTACGKY+RVCCLSIIDPGDSDIIKSMP +
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

A0A6J1DXV1 60S ribosomal protein L30

1.0e-49

74.83

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGE
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

A0A6J1H9H7 60S ribosomal protein L30-like

2.6e-50

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGES
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES

A0A6J1JJ11 60S ribosomal protein L30-like

2.6e-50

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES
        VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGES
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

4.7e-44

63.64

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV  KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK                                 KL++IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        V VHH++G+NVDLGTACGKY+RVCCLSIIDPGDSDIIK+ PGE
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

O49884 60S ribosomal protein L30

3.3e-50

70.63

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SK                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIK++PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

Q8VZ19 60S ribosomal protein L30-2

1.4e-45

65.73

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MVT KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SK                                GKLILI+ NCPPLR+SEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

Q9C8F7 Putative 60S ribosomal protein L30-1

5.5e-45

65.03

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                                GKLILI++NCPPLR+SEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

Q9M5M6 60S ribosomal protein L30

2.6e-47

67.83

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++K                                GKLI+IANNCPPLRKSEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNG+NVDLGTACGKY+RVCCLSIID GDSDIIKS+PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

3.9e-46

65.03

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV AKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                                GKLILI++NCPPLR+SEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.0e-46

65.73

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MVT KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SK                                GKLILI+ NCPPLR+SEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.3e-44

62.94

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Query:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK
        MV  KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                                GKLILI++NCPPLR+SEIEYYAML+K
Subjt:  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSK

Query:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE
        VGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++PG+
Subjt:  VGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGE

Sequences

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CDS sequence

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ATGGTGACCGCAAAGAAGACGAAGAAGACACATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAAAC
CTTGAGGAACTCTAAAGTTAGGGTTTTAGCCGAAATCACTGTAAGTTTCGTTAAGCTGGAGAGAATGAAAGTGTTGTATGCTGTCGATCTGAAACTCTGTTTAGCTAATT
TAGGTAAACTGATTCTCATTGCTAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAATACTATGCGATGTTGTCGAAGGTTGGAGTTCATCATTACAACGGAAGCAAT
GTAGACCTCGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGTATTATCGATCCCGGTGATTCTGATATTATCAAGAGCATGCCCGGAGAAAGTTAG

mRNA sequence

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Protein sequence

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MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVRVLAEITVSFVKLERMKVLYAVDLKLCLANLGKLILIANNCPPLRKSEIEYYAMLSKVGVHHYNGSN
VDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES

HG10007394 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome