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HG10007405 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007405
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionzf-RVT domain-containing protein
Genome locationChr10:4601373..4602250
RNA-Seq ExpressionHG10007405
SyntenyHG10007405
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG60858.1 hypothetical protein EZV62_012221 [Acer yangbiense]3.7e-0537.33Show/hide
Query:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKF
        C  C +K   V HALF C  A++VW+++   S+    R++   D  + +AG  N  EL   C+  WA+W DRN F
Subjt:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKF

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]5.8e-0637.11Show/hide
Query:  MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNL-DFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIP
        M NL K+ +D    C VC ++  T  HALF+C RAKEVW N +    F +   N+++ D  + L   L+  +   V +  WAIW DRN    +  IP
Subjt:  MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNL-DFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIP

XP_030498122.1 uncharacterized protein LOC115713779 [Cannabis sativa]5.8e-0636.71Show/hide
Query:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRN-KFYKK
        CP+C+ +  T+PHALF C RAKEVW  +  N  F     +   +F + ++G  + LE        W+IW +RN +F+ K
Subjt:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRN-KFYKK

XP_030502555.1 uncharacterized protein LOC115717715 [Cannabis sativa]2.2e-0535.63Show/hide
Query:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKF
        NL  + +     C +C R   ++ HALF C  AK VW NT     F +  +  + D+ M L+  L + EL  +  T W IW DRN F
Subjt:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKF

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]4.9e-0532.1Show/hide
Query:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENI
        C +C   + TV HALF C RAK VW  +  +  F  +  +   D  ++L+  L+  EL    +  W+IW +RN  Y   ++
Subjt:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENI

TrEMBL top hitse value%identityAlignment
A0A6J1CTE3 uncharacterized protein LOC1110145782.8e-0637.11Show/hide
Query:  MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNL-DFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIP
        M NL K+ +D    C VC ++  T  HALF+C RAKEVW N +    F +   N+++ D  + L   L+  +   V +  WAIW DRN    +  IP
Subjt:  MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNL-DFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIP

A0A7N2L6E8 zf-RVT domain-containing protein9.6e-0739.56Show/hide
Query:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMV---LAGRLNDLELVWVCITAWAIWGDRNKFY
        NL K+ + V   C +C +K  T  H L+EC  A+ VWS  +SN    + R N+ +DF ++   +  +L+ LEL     TAWAIW  RN+FY
Subjt:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMV---LAGRLNDLELVWVCITAWAIWGDRNKFY

A0A7N2LT45 zf-RVT domain-containing protein1.1e-0532.97Show/hide
Query:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKE
        NL+++ + +   C +C +   T  H L+EC  A+++WS        S    +D       +A RL+  EL    +  WAIWG RNKFY K+
Subjt:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKE

A0A803PF68 Uncharacterized protein2.8e-0636.71Show/hide
Query:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRN-KFYKK
        CP+C+ +  T+PHALF C RAKEVW  +  N  F     +   +F + ++G  + LE        W+IW +RN +F+ K
Subjt:  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRN-KFYKK

A0A803PKJ2 Uncharacterized protein2.8e-0636.78Show/hide
Query:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKF
        NL  Q +     C +C R   ++ HALF C  AK VW NT  +  F +  +  + D+ M L+  L   EL  +  T W IW DRN F
Subjt:  NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAACCTTGAGAAACAGGATTTAGATGTAGTTCTTGTTTGTCCAGTTTGCAGGAGGAAGGATGTAACAGTGCCTCATGCATTGTTTGAATGTTTCAGAGCTAAAGA
AGTTTGGTCGAATACTGTTTCTAACAGCTGGTTTTCTGAACTAAGGCACAATGATAACTTAGATTTTTGCATGGTGTTGGCAGGGAGATTAAATGACTTGGAGCTTGTAT
GGGTTTGCATTACCGCTTGGGCTATTTGGGGAGATAGGAATAAGTTCTATAAAAAGGAAAATATACCTTTTGTGGAGCACCATGGTGGGCTTTGGTGCCCGACGGATGCT
GAAGCTTTGACTATTTATAAGGGTCTTCAGTTGGCTGTTAGAATGGAGCTATCTCAAATTCTGGTTTTATTTGATTCCTTGGGAATTATTCAGATGCTCATGGGCAATGC
GGTGATCCAGGTGGAATCGACAAATTATATGGCTGATATTAAGGAAATAAAGAAAAAATATATATACATTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAACCTTGAGAAACAGGATTTAGATGTAGTTCTTGTTTGTCCAGTTTGCAGGAGGAAGGATGTAACAGTGCCTCATGCATTGTTTGAATGTTTCAGAGCTAAAGA
AGTTTGGTCGAATACTGTTTCTAACAGCTGGTTTTCTGAACTAAGGCACAATGATAACTTAGATTTTTGCATGGTGTTGGCAGGGAGATTAAATGACTTGGAGCTTGTAT
GGGTTTGCATTACCGCTTGGGCTATTTGGGGAGATAGGAATAAGTTCTATAAAAAGGAAAATATACCTTTTGTGGAGCACCATGGTGGGCTTTGGTGCCCGACGGATGCT
GAAGCTTTGACTATTTATAAGGGTCTTCAGTTGGCTGTTAGAATGGAGCTATCTCAAATTCTGGTTTTATTTGATTCCTTGGGAATTATTCAGATGCTCATGGGCAATGC
GGTGATCCAGGTGGAATCGACAAATTATATGGCTGATATTAAGGAAATAAAGAAAAAATATATATACATTTCATAA
Protein sequenceShow/hide protein sequence
MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIPFVEHHGGLWCPTDA
EALTIYKGLQLAVRMELSQILVLFDSLGIIQMLMGNAVIQVESTNYMADIKEIKKKYIYIS