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HG10007423 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007423
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr10:4912181..4913574
RNA-Seq ExpressionHG10007423
SyntenyHG10007423
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038339.1 uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa]1.2e-0643.94Show/hide
Query:  KKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITK
        ++ + KHNP +V++QE+K+ EFD  FI+SLWS  +I W  +ES G+SG IL +W+  ++   E  K
Subjt:  KKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITK

RVW29923.1 hypothetical protein CK203_100289 [Vitis vinifera]9.3e-0737.18Show/hide
Query:  NPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI
        +P   ++++K  ++K  +    P +V++QETK  E DR F+ S+WSA N +W+AL ++G+ G ILIIW+   +   E+
Subjt:  NPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]3.2e-0747.83Show/hide
Query:  KCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI
        K A IK  I    P IVIL ETKSS  +  FI+SLWS+ +I W++L+++G+SG I+++W+  S SA E+
Subjt:  KCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]1.1e-1054.29Show/hide
Query:  EKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI
        +K ALIK+ I + NP +VILQETK S  D   ++SLWSA  INWSAL+++G +  ILI+WNDP + A E+
Subjt:  EKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]4.2e-0743.94Show/hide
Query:  ALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATE
        A++K+ +VK NP +VILQ++K S  +R  ++S+WS+  + W+ LE+ GSSG ILI+W + SI+  +
Subjt:  ALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATE

TrEMBL top hitse value%identityAlignment
A0A2N9G4T0 Reverse transcriptase domain-containing protein4.5e-0736.08Show/hide
Query:  REITDLKSLINYDNPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITKADGF
        RE+  L S INY+  +  SQ +K   ++  +      ++ LQETK   FDR  I+SLW + +++W +L SNG+SG IL++W+   +   +I +A G+
Subjt:  REITDLKSLINYDNPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITKADGF

A0A2N9HX69 Reverse transcriptase domain-containing protein3.5e-0735.42Show/hide
Query:  REITDLKSLINYDNPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITKADG
        RE+  L S INY+  +  SQ +K   ++  +      ++ LQETK   FDR  I+SLW + +++W +L SNG+SG IL++W+   +   +   A G
Subjt:  REITDLKSLINYDNPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITKADG

A0A438D382 Endo/exonuclease/phosphatase domain-containing protein4.5e-0737.18Show/hide
Query:  NPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI
        +P   ++++K  ++K  +    P +V++QETK  E DR F+ S+WSA N +W+AL ++G+ G ILIIW+   +   E+
Subjt:  NPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI

A0A6J1CVN2 uncharacterized protein LOC1110146571.6e-0747.83Show/hide
Query:  KCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI
        K A IK  I    P IVIL ETKSS  +  FI+SLWS+ +I W++L+++G+SG I+++W+  S SA E+
Subjt:  KCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI

A0A6J1E2G6 uncharacterized protein LOC1110254055.2e-1154.29Show/hide
Query:  EKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI
        +K ALIK+ I + NP +VILQETK S  D   ++SLWSA  INWSAL+++G +  ILI+WNDP + A E+
Subjt:  EKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGCGTTCATGGACCTATTCCAGCAGATCTTCCCAACATCAAACGAGTACAACGACTCGATAGCCTCCTCGAACCATACCCTGGTACTGACACCACTGCTCCTAC
TTCATCTTTGTCCGATGGAATAGACAACACATCGACGGTCACCAGTTCTCAAGGAGACCCACCATCCAACGCTTTATCCTTACCCGACCCATCTGTGCCTCTCTCCTCCC
CCGACAAGACGACATTCACTATTTACCAACAAAAAACCTTCTCCATCCCCAACAACAAATTCTCCACAAATCCACCCATTCCCGATGAACCAAACACTGATGACTATCTA
TCCAGCCCTCTGCCTCTCTCATCGTTCCATCACACAGATCCTTTCCGTCCTCCCTCCTTACCATCTCTCAGGGAATCTATAGTTGGAAAGTCCTTGATGGATCAGCTCGA
ACAACCTCTCTCACCTCCTTTCATATCAGTTGACCTCTCCTTTGTGGCCGAAGAACAGGTCGTTGATCCTAGTTGCTATTTGAAGTTTATTTTATCATGGCTCCAAAAGA
ACATGCATTATATCACGGCTCTATCATTGACAAAGAAGAATCCAAAAATTGCCAGAAAGCAGAACCAGCTTATTCGAGAGATCACCGACCTCAAGTCCTTGATTAACTAT
GACAATCCTTCCTCCTCTTCTCAAATTGAAAAATGTGCCCTCATCAAGAAAGAAATTGTGAAGCATAACCCTATCATCGTGATTCTTCAAGAAACCAAATCTTCTGAATT
TGACCGTTTCTTTATACAATCATTATGGAGTGCCTGTAATATCAATTGGTCGGCTTTGGAATCCAATGGCTCTTCTGGGAGTATCCTCATCATATGGAATGATCCATCTA
TTAGTGCCACTGAGATTACAAAAGCTGATGGCTTCAATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGCGTTCATGGACCTATTCCAGCAGATCTTCCCAACATCAAACGAGTACAACGACTCGATAGCCTCCTCGAACCATACCCTGGTACTGACACCACTGCTCCTAC
TTCATCTTTGTCCGATGGAATAGACAACACATCGACGGTCACCAGTTCTCAAGGAGACCCACCATCCAACGCTTTATCCTTACCCGACCCATCTGTGCCTCTCTCCTCCC
CCGACAAGACGACATTCACTATTTACCAACAAAAAACCTTCTCCATCCCCAACAACAAATTCTCCACAAATCCACCCATTCCCGATGAACCAAACACTGATGACTATCTA
TCCAGCCCTCTGCCTCTCTCATCGTTCCATCACACAGATCCTTTCCGTCCTCCCTCCTTACCATCTCTCAGGGAATCTATAGTTGGAAAGTCCTTGATGGATCAGCTCGA
ACAACCTCTCTCACCTCCTTTCATATCAGTTGACCTCTCCTTTGTGGCCGAAGAACAGGTCGTTGATCCTAGTTGCTATTTGAAGTTTATTTTATCATGGCTCCAAAAGA
ACATGCATTATATCACGGCTCTATCATTGACAAAGAAGAATCCAAAAATTGCCAGAAAGCAGAACCAGCTTATTCGAGAGATCACCGACCTCAAGTCCTTGATTAACTAT
GACAATCCTTCCTCCTCTTCTCAAATTGAAAAATGTGCCCTCATCAAGAAAGAAATTGTGAAGCATAACCCTATCATCGTGATTCTTCAAGAAACCAAATCTTCTGAATT
TGACCGTTTCTTTATACAATCATTATGGAGTGCCTGTAATATCAATTGGTCGGCTTTGGAATCCAATGGCTCTTCTGGGAGTATCCTCATCATATGGAATGATCCATCTA
TTAGTGCCACTGAGATTACAAAAGCTGATGGCTTCAATTTCTAG
Protein sequenceShow/hide protein sequence
MAGVHGPIPADLPNIKRVQRLDSLLEPYPGTDTTAPTSSLSDGIDNTSTVTSSQGDPPSNALSLPDPSVPLSSPDKTTFTIYQQKTFSIPNNKFSTNPPIPDEPNTDDYL
SSPLPLSSFHHTDPFRPPSLPSLRESIVGKSLMDQLEQPLSPPFISVDLSFVAEEQVVDPSCYLKFILSWLQKNMHYITALSLTKKNPKIARKQNQLIREITDLKSLINY
DNPSSSSQIEKCALIKKEIVKHNPIIVILQETKSSEFDRFFIQSLWSACNINWSALESNGSSGSILIIWNDPSISATEITKADGFNF