CuGenDBv2

Gene ID	HG10007424
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Genome location	Chr10:4913814..4914428
RNA-Seq Expression	HG10007424
Synteny	HG10007424
Gene Ontology terms	GO:0050789 - regulation of biological process (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW42993.1 LINE-1 reverse transcriptase-like [Vitis vinifera]

4.0e-30

38.12

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F    ++RL RPTS+HYPILL+ G    GP PF+FENMW++   F  L K WW      GRP Y    KLK +K  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E+ +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

RVX02877.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

1.5e-29

38.67

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F     +RL RPTS+HYPILL+ G    GP PF+FENMW++   F  L K WW   ++ GRP Y    KLK LK  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E  +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

RVX17959.1 Protein MICRORCHIDIA 4 [Vitis vinifera]

5.2e-30

38.67

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F     +RL RPTS+HYPILL+ G    GP PF+FENMW++   F  L K WW   ++ GRP Y    KLK LK  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E  +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

RVX21092.1 putative ribonuclease H protein [Vitis vinifera]

1.2e-29

38.12

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F    ++RL RPTS+HYPILL+ G    G  PF+FENMW++   F  L K WW      GRP Y    KLK LK  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E+ +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]

9.5e-32

40.98

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N + +LI+ F++    ++K  M   KR+ R TS+H+PILL  G  N G  PFRFENMW+ H +F P  + WW    L G P +G M KLK LK  IK W 
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRL-IKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAK
           F C+ + +      +  LD + E   P   D  R R+  KE +L + +KEE FW+Q+CK++WL +GD N+ FFHR +  K
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRL-IKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAK

TrEMBL top hits

e value

%identity

Alignment

A0A438E5Q1 LINE-1 reverse transcriptase-like

1.9e-30

38.12

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F    ++RL RPTS+HYPILL+ G    GP PF+FENMW++   F  L K WW      GRP Y    KLK +K  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E+ +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

A0A438J1N8 Transposon TX1 uncharacterized 149 kDa protein

7.4e-30

38.67

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F     +RL RPTS+HYPILL+ G    GP PF+FENMW++   F  L K WW   ++ GRP Y    KLK LK  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E  +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

A0A438K9R4 Protein MICRORCHIDIA 4

2.5e-30

38.67

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F     +RL RPTS+HYPILL+ G    GP PF+FENMW++   F  L K WW   ++ GRP Y    KLK LK  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E  +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

A0A438KIS2 Putative ribonuclease H protein

5.6e-30

38.12

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N T   +++F+     +++F    ++RL RPTS+HYPILL+ G    G  PF+FENMW++   F  L K WW      GRP Y    KLK LK  +K WN
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA
        K  F  L   +   L  +   DS++E+ +  +V+ ++K+  KE      S EE+ W+Q  ++ WL++GD N+ FFHR+ NA
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNA

A0A6J1E2G6 uncharacterized protein LOC111025405

4.6e-32

40.98

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Query:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN
        N + +LI+ F++    ++K  M   KR+ R TS+H+PILL  G  N G  PFRFENMW+ H +F P  + WW    L G P +G M KLK LK  IK W 
Subjt:  NPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWN

Query:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRL-IKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAK
           F C+ + +      +  LD + E   P   D  R R+  KE +L + +KEE FW+Q+CK++WL +GD N+ FFHR +  K
Subjt:  KTTFSCLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRL-IKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

3.0e-07

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Query:  SNHYPILLQL-GIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWNKTTFSCLTTIRNQHLFDLAILDSMKEQGTPK
        S+H P ++ L  +     + FR+ +    HP+FL      W      G   +   + LK  K   K  N+  F     I+++    L  L+S++ Q    
Subjt:  SNHYPILLQL-GIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWNKTTFSCLTTIRNQHLFDLAILDSMKEQGTPK

Query:  QVDG--DRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAKSGK
          D     + + +++  + ++  E F++QK + +WL+DGD N+ FFH+++ A   K
Subjt:  QVDG--DRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAKSGK

Sequences

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CDS sequence

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TCCAACTTCAGAGCCAACCCCACTCCAACTTTGATCAACAAGTTCATTATCGCAGAGGCTATTGTGGAGAAATTCAAAATGGCATCTGTCAAAAGATTAGACCGGCCTAC
CTCTAACCATTATCCCATCCTCCTTCAATTGGGTATTGCCAATGGGGGCCCTCAGCCCTTTCGCTTTGAAAACATGTGGATGGAACATCCCTCTTTTCTTCCCCTCCGTA
AGCATTGGTGGTCTACCAACAAACTGCAAGGAAGGCCCGAATACGGTTTCATGCAGAAACTGAAACTTCTCAAACCTGTCATTAAAGATTGGAATAAGACTACCTTTAGT
TGCTTGACTACAATTCGTAACCAGCACCTTTTTGATCTAGCCATCTTAGACTCCATGAAAGAACAAGGAACTCCAAAACAAGTCGATGGTGACAGAAAAAGGCTCATCAA
AGAACAAATCCTCTATCTAAGTTCTAAAGAGGAAATTTTTTGGAAACAAAAATGCAAGAAAAGATGGCTTAAGGATGGAGATTTGAACTCTAACTTCTTCCACCGCCTTA
TGAATGCTAAAAGTGGAAAAATACAATCATTGAAATCTTGTCTAGAGAGAGCCATAGTCGATTGA

mRNA sequence

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Protein sequence

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SNFRANPTPTLINKFIIAEAIVEKFKMASVKRLDRPTSNHYPILLQLGIANGGPQPFRFENMWMEHPSFLPLRKHWWSTNKLQGRPEYGFMQKLKLLKPVIKDWNKTTFS
CLTTIRNQHLFDLAILDSMKEQGTPKQVDGDRKRLIKEQILYLSSKEEIFWKQKCKKRWLKDGDLNSNFFHRLMNAKSGKIQSLKSCLERAIVD

HG10007424 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome