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HG10007483 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007483
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr10:5862640..5865014
RNA-Seq ExpressionHG10007483
SyntenyHG10007483
Gene Ontology termsGO:1900865 - chloroplast RNA modification (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022080.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-3592.41Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAIRGYLESENPRNAV LYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

XP_022927674.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata]2.9e-3592.41Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAIRGYLESENPRNAV LYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

XP_022966942.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima]2.9e-3593.67Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA +PNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

XP_023531862.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita pepo subsp. pepo]1.9e-3492.41Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPNVFSWNVAIRGYLESENPR AV LYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

XP_038878576.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida]4.5e-3696.2Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ+ISTGLISDGFALSRLVAFCAISEWRNLDYCDKILD+AANPNVFSWNVAIRGYLESENPRNA+LLYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

TrEMBL top hitse value%identityAlignment
A0A1S3BP74 pentatricopeptide repeat-containing protein At2g22410, mitochondrial4.5e-3491.14Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        M+QIHAQ+ISTGLISDGFALSRLVAFCAISEWRNLDYCDKIL+NAANPNVFSWN+AIRGY+ESENPR AVLLYR MLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

A0A5A7UVG6 Pentatricopeptide repeat-containing protein4.5e-3491.14Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        M+QIHAQ+ISTGLISDGFALSRLVAFCAISEWRNLDYCDKIL+NAANPNVFSWN+AIRGY+ESENPR AVLLYR MLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

A0A6J1DMT0 pentatricopeptide repeat-containing protein At2g22410, mitochondrial1.0e-3389.87Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        M+Q+ AQ+ISTG ISDGFALSRLVAFCAISEWRNLDYCDKILDNA NPNVFSWNVAIRGY ESENPRNAVL+YRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

A0A6J1ELP9 pentatricopeptide repeat-containing protein At2g22410, mitochondrial1.4e-3592.41Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAIRGYLESENPRNAV LYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

A0A6J1HQQ6 pentatricopeptide repeat-containing protein At2g22410, mitochondrial1.4e-3593.67Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
        MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA +PNVFSWNVAIRGYLESENPRNAVLLYRKMLRK
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRK

SwissProt top hitse value%identityAlignment
O49399 Pentatricopeptide repeat-containing protein At4g188403.7e-0938.55Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAIS-EWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRKVIF
        ++Q HA ++ TGL  D F+ S+LVAF A + E + + Y   IL+   +PN F+ N  IR Y  S  P  A+ ++R+ML   +F
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAIS-EWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRKVIF

O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic2.8e-0933.77Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML
        ++Q H  +I TG  SD ++ S+L A  A+S + +L+Y  K+ D    PN F+WN  IR Y    +P  ++  +  M+
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML

Q9FJY7 Pentatricopeptide repeat-containing protein At5g665205.2e-1137.18Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRN-LDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML
        ++QIHA+++ TGL+ D +A+++ ++FC  S   + L Y   + D    P+ F WN+ IRG+  S+ P  ++LLY++ML
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRN-LDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML

Q9SJG6 Pentatricopeptide repeat-containing protein At2g42920, chloroplastic8.3e-0940.26Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML
        ++QIHA LI TGLISD    SR++AFC  S   +++Y   +     + N F WN  IRG+  S  P  A+ ++  ML
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial1.5e-2162.82Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLR
        ++QI AQ+I  GLI D FA SRL+AFCA+SE R LDY  KIL    NPN+FSWNV IRG+ ESENP+ + LLY++MLR
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLR

Arabidopsis top hitse value%identityAlignment
AT2G22410.1 SLOW GROWTH 11.0e-2262.82Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLR
        ++QI AQ+I  GLI D FA SRL+AFCA+SE R LDY  KIL    NPN+FSWNV IRG+ ESENP+ + LLY++MLR
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLR

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-1033.77Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML
        ++Q H  +I TG  SD ++ S+L A  A+S + +L+Y  K+ D    PN F+WN  IR Y    +P  ++  +  M+
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML

AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein5.9e-1040.26Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML
        ++QIHA LI TGLISD    SR++AFC  S   +++Y   +     + N F WN  IRG+  S  P  A+ ++  ML
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML

AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.6e-1038.55Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAIS-EWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRKVIF
        ++Q HA ++ TGL  D F+ S+LVAF A + E + + Y   IL+   +PN F+ N  IR Y  S  P  A+ ++R+ML   +F
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAIS-EWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRKVIF

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.7e-1237.18Show/hide
Query:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRN-LDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML
        ++QIHA+++ TGL+ D +A+++ ++FC  S   + L Y   + D    P+ F WN+ IRG+  S+ P  ++LLY++ML
Subjt:  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRN-LDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKML


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAATTCACGCCCAATTGATTTCAACCGGTTTGATCTCAGATGGGTTTGCTCTCAGTCGCCTCGTTGCCTTCTGTGCGATTTCGGAATGGCGAAATCTCGACTA
CTGTGACAAAATTCTTGACAATGCTGCAAACCCAAACGTTTTTTCTTGGAATGTGGCGATTAGGGGCTATTTAGAGAGTGAAAATCCCAGAAATGCTGTTCTTTTGTACA
GGAAAATGCTGAGAAAAGTTATATTTGAAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAATTCACGCCCAATTGATTTCAACCGGTTTGATCTCAGATGGGTTTGCTCTCAGTCGCCTCGTTGCCTTCTGTGCGATTTCGGAATGGCGAAATCTCGACTA
CTGTGACAAAATTCTTGACAATGCTGCAAACCCAAACGTTTTTTCTTGGAATGTGGCGATTAGGGGCTATTTAGAGAGTGAAAATCCCAGAAATGCTGTTCTTTTGTACA
GGAAAATGCTGAGAAAAGTTATATTTGAAGCATGA
Protein sequenceShow/hide protein sequence
MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRKVIFEA