CuGenDBv2

Gene ID	HG10007493
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Genome location	Chr10:6001822..6005275
RNA-Seq Expression	HG10007493
Synteny	HG10007493
Gene Ontology terms	GO:0008152 - metabolic process (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139034.1 chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus]

2.1e-77

72.97

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALS+VGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKK  S GR+R+ KPKHLDLSSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        YEDNFDDVKM                                                  EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
Subjt:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNTEKIG
        MRERLMQTVIWPSDDTNTEKIG
Subjt:  MRERLMQTVIWPSDDTNTEKIG

XP_008450421.1 PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo]

2.8e-77

72.97

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Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDLSSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        YEDNFDDVKM                                                  EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
Subjt:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNTEKIG
        MRERLMQTVIWPSDDTNTEKIG
Subjt:  MRERLMQTVIWPSDDTNTEKIG

XP_022926878.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]

4.0e-76

71.04

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQY
        MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+NSMGRKR+ KPKHLDLSSSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQY
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQY

Query:  EDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELM
        ED FDDVKM                                                  E+QDLAERVMITRLHLYGKWVKKCNHAEIYQEIS+ENVELM
Subjt:  EDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELM

Query:  RERLMQTVIWPSDDTNTEKIG
        RERLM+TVIWPSDDTNTEKIG
Subjt:  RERLMQTVIWPSDDTNTEKIG

XP_038879928.1 chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida]

5.1e-79

74.32

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Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALSVVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVM KKN MGR R+ K KHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        YEDNFDDVKM                                                  EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
Subjt:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNTEKIG
        MRERLMQTVIWPSDDTNTEKIG
Subjt:  MRERLMQTVIWPSDDTNTEKIG

XP_038879929.1 chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida]

1.8e-79

75.69

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Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALSVVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVM KKN MGR R+ K KHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM----------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRER
        YEDNFDDVKM                                              EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRER
Subjt:  YEDNFDDVKM----------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRER

Query:  LMQTVIWPSDDTNTEKIG
        LMQTVIWPSDDTNTEKIG
Subjt:  LMQTVIWPSDDTNTEKIG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXJ9 Uncharacterized protein

1.0e-77

72.97

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALS+VGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKK  S GR+R+ KPKHLDLSSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        YEDNFDDVKM                                                  EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
Subjt:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNTEKIG
        MRERLMQTVIWPSDDTNTEKIG
Subjt:  MRERLMQTVIWPSDDTNTEKIG

A0A1S3BNK3 uncharacterized protein LOC103492031

1.4e-77

72.97

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDLSSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        YEDNFDDVKM                                                  EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
Subjt:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNTEKIG
        MRERLMQTVIWPSDDTNTEKIG
Subjt:  MRERLMQTVIWPSDDTNTEKIG

A0A5D3D5P8 RcbX domain-containing protein

1.4e-77

72.97

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDLSSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQ
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        YEDNFDDVKM                                                  EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
Subjt:  YEDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNTEKIG
        MRERLMQTVIWPSDDTNTEKIG
Subjt:  MRERLMQTVIWPSDDTNTEKIG

A0A6J1EJF5 chaperonin-like RbcX protein 2, chloroplastic

2.0e-76

71.04

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Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQY
        MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+NSMGRKR+ KPKHLDLSSSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQY
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQY

Query:  EDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELM
        ED FDDVKM                                                  E+QDLAERVMITRLHLYGKWVKKCNHAEIYQEIS+ENVELM
Subjt:  EDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELM

Query:  RERLMQTVIWPSDDTNTEKIG
        RERLM+TVIWPSDDTNTEKIG
Subjt:  RERLMQTVIWPSDDTNTEKIG

A0A6J1HZ31 chaperonin-like RbcX protein 2, chloroplastic

4.4e-76

71.04

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQY
        MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMKK+SMGRKR+ KPKHLDLSSSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQY
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQY

Query:  EDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELM
        ED FDDVKM                                                  E+QDLAERVMITRLHLYGKWVKKCNHAEIYQEIS+ENVELM
Subjt:  EDNFDDVKM--------------------------------------------------EQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELM

Query:  RERLMQTVIWPSDDTNTEKIG
        RERLM+TVIWPSDDTNTEKIG
Subjt:  RERLMQTVIWPSDDTNTEKIG

SwissProt top hits

e value

%identity

Alignment

Q8L9X2 Chaperonin-like RbcX protein 2, chloroplastic

9.8e-33

41.28

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MV A  VVGS V+DS SSPCLCLDA  T +I                RK++L K ++L+L SSF  +   + LS   ++R + ++ K + L+V +++ G 
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVK--------------------------------------------------MEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        Y+D F DV+                                                   E Q+LAERVMITRLHLYGKW+KKC+H +IYQEISDEN+ L
Subjt:  YEDNFDDVK--------------------------------------------------MEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNT
        MRERLM+TVIWPSDDTN+
Subjt:  MRERLMQTVIWPSDDTNT

Arabidopsis top hits

e value

%identity

Alignment

AT5G19855.1 Chaperonin-like RbcX protein

7.0e-34

41.28

Show/hide

Query:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ
        MV A  VVGS V+DS SSPCLCLDA  T +I                RK++L K ++L+L SSF  +   + LS   ++R + ++ K + L+V +++ G 
Subjt:  MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQ

Query:  YEDNFDDVK--------------------------------------------------MEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL
        Y+D F DV+                                                   E Q+LAERVMITRLHLYGKW+KKC+H +IYQEISDEN+ L
Subjt:  YEDNFDDVK--------------------------------------------------MEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVEL

Query:  MRERLMQTVIWPSDDTNT
        MRERLM+TVIWPSDDTN+
Subjt:  MRERLMQTVIWPSDDTNT

Sequences

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CDS sequence

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ATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGG
GGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGG
CGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGGAA
CAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGT
GGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAA

mRNA sequence

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Protein sequence

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MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKME
QQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG

HG10007493 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome