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HG10007520 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007520
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNuclear cap-binding protein subunit 1
Genome locationChr10:6408826..6411328
RNA-Seq ExpressionHG10007520
SyntenyHG10007520
Gene Ontology termsGO:0045292 - mRNA cis splicing, via spliceosome (biological process)
GO:0051028 - mRNA transport (biological process)
GO:0005846 - nuclear cap binding complex (cellular component)
GO:0000339 - RNA cap binding (molecular function)
InterPro domainsIPR016021 - MIF4G-like domain superfamily
IPR016024 - Armadillo-type fold
IPR027159 - Nuclear cap-binding protein subunit 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067225.1 nuclear cap-binding protein subunit 1 [Cucumis melo var. makuwa]5.2e-5669.06Show/hide
Query:  MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSF
        MAP PT+KITLFV+FS    +Y P+FDYLSLISIW LQETCF AIRRELDHYGDEIL                   LIGL+NLENEDFVKK+VE+TH SF
Subjt:  MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSF

Query:  Q---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        Q                     MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  Q---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
XP_004139050.1 nuclear cap-binding protein subunit 1 [Cucumis sativus]1.1e-4063.23Show/hide
Query:  DYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSK
        +Y +     D  ETCF A+RRELDHYGDE+L                   LIGL+NLENEDFVKK+VE+TH SFQ                     MSSK
Subjt:  DYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSK

Query:  VLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        VLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  VLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
XP_008450385.1 PREDICTED: nuclear cap-binding protein subunit 1 [Cucumis melo]8.1e-4168.53Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETCF AIRRELDHYGDEIL                   LIGL+NLENEDFVKK+VE+TH SFQ                     MSSKVLLSTSLVVVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
XP_022154329.1 nuclear cap-binding protein subunit 1 [Momordica charantia]1.2e-4169.23Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETCFAAIRRELDHYGDEIL                   LIGL+NLENEDFVKKIVEQTHT+FQ                     MSSKVLLSTSLVVVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVD+EKGNPAWQARADFYITCILSCFPWGGAEL+E
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
XP_038878426.1 nuclear cap-binding protein subunit 1 [Benincasa hispida]4.3e-4269.93Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETCFAAIRRELDHYGDE+L                   LIGL+NLENEDFVKKIVE+THTSFQ                     MSSKVLLSTSLVVVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
TrEMBL top hitse value%identityAlignment
A0A0A0M082 MIF4G domain-containing protein5.1e-4163.23Show/hide
Query:  DYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSK
        +Y +     D  ETCF A+RRELDHYGDE+L                   LIGL+NLENEDFVKK+VE+TH SFQ                     MSSK
Subjt:  DYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSK

Query:  VLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        VLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  VLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
A0A1S3BQ48 nuclear cap-binding protein subunit 13.9e-4168.53Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETCF AIRRELDHYGDEIL                   LIGL+NLENEDFVKK+VE+TH SFQ                     MSSKVLLSTSLVVVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
A0A5D3DWR2 Nuclear cap-binding protein subunit 12.5e-5669.06Show/hide
Query:  MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSF
        MAP PT+KITLFV+FS    +Y P+FDYLSLISIW LQETCF AIRRELDHYGDEIL                   LIGL+NLENEDFVKK+VE+TH SF
Subjt:  MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSF

Query:  Q---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        Q                     MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Subjt:  Q---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
A0A6J1DLR3 nuclear cap-binding protein subunit 16.0e-4269.23Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETCFAAIRRELDHYGDEIL                   LIGL+NLENEDFVKKIVEQTHT+FQ                     MSSKVLLSTSLVVVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVD+EKGNPAWQARADFYITCILSCFPWGGAEL+E
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
A0A6J1KQ76 nuclear cap-binding protein subunit 1-like1.1e-4067.83Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETCF AIRRELDHYGDE+L                   LIGLINLENEDFVKKIV+QTH SFQ                     MSSKVLLSTSLVVVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVD+EKGNPAWQARADFYI+CILSCFPWGGAELVE
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
SwissProt top hitse value%identityAlignment
Q10LJ0 Nuclear cap-binding protein subunit 12.1e-2343.36Show/hide
Query:  ETCFAAIRRELDHYGDEI-------------------LLIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE
        ETC+  + RE +H  D +                   +LIGLINLENEDF K IV+ TH + Q                     M SKV+L  S++  FE
Subjt:  ETCFAAIRRELDHYGDEI-------------------LLIGLINLENEDFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
         LLSSAAT +D+E GNP+WQ RADFY+ CIL+  PWGG+EL E
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Q9SIU2 Nuclear cap-binding protein subunit 12.3e-3049.65Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQMS---------------------SKVLLSTSLVVVFE
        ETCF  IRRE++  GD++L                   LIGL+NLENEDFV+K+VE  H +FQ++                     SKV+   SL+VVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQMS---------------------SKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVD+EKGNP+WQ +ADFY+ CILS  PWGG+EL E
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
Arabidopsis top hitse value%identityAlignment
AT2G13540.1 ARM repeat superfamily protein1.6e-3149.65Show/hide
Query:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQMS---------------------SKVLLSTSLVVVFE
        ETCF  IRRE++  GD++L                   LIGL+NLENEDFV+K+VE  H +FQ++                     SKV+   SL+VVFE
Subjt:  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHTSFQMS---------------------SKVLLSTSLVVVFE

Query:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE
        TLLSSAATTVD+EKGNP+WQ +ADFY+ CILS  PWGG+EL E
Subjt:  TLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCTCATCCGACTACAAAGATCACATTGTTCGTCTCTTTCTCTCTCACTCCTTCCGTCTACACTCCATTATTCGACTACTTGTCGTTGATTTCTATCTGG
GACTTGCAGGAAACTTGCTTTGCTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAATTTTGCTGATTGGATTAATTAATCTGGAAAATGAAGACTTCGTG
AAGAAAATTGTGGAGCAAACTCACACAAGTTTTCAGATGAGCAGTAAAGTCCTGCTGTCCACATCTCTAGTTGTTGTTTTTGAAACATTACTATCTTCAGCTGCC
ACAACGGTGGATGATGAGAAGGGAAACCCTGCATGGCAGGCACGTGCTGACTTTTACATAACTTGCATTCTTTCTTGTTTTCCCTGGGGAGGCGCCGAACTGGTT
GAGGTATTGTTGTTTCATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCTCATCCGACTACAAAGATCACATTGTTCGTCTCTTTCTCTCTCACTCCTTCCGTCTACACTCCATTATTCGACTACTTGTCGTTGATTTCTATCTGG
GACTTGCAGGAAACTTGCTTTGCTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAATTTTGCTGATTGGATTAATTAATCTGGAAAATGAAGACTTCGTG
AAGAAAATTGTGGAGCAAACTCACACAAGTTTTCAGATGAGCAGTAAAGTCCTGCTGTCCACATCTCTAGTTGTTGTTTTTGAAACATTACTATCTTCAGCTGCC
ACAACGGTGGATGATGAGAAGGGAAACCCTGCATGGCAGGCACGTGCTGACTTTTACATAACTTGCATTCTTTCTTGTTTTCCCTGGGGAGGCGCCGAACTGGTT
GAGGTATTGTTGTTTCATATCTGA
Protein sequenceShow/hide protein sequence
MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEILLIGLINLENEDFVKKIVEQTHTSFQMSSKVLLSTSLVVVFETLLSSAA
TTVDDEKGNPAWQARADFYITCILSCFPWGGAELVEVLLFHI