; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10007523 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007523
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr10:6442693..6443121
RNA-Seq ExpressionHG10007523
SyntenyHG10007523
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056004.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.4e-0737.5Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK
        ++N  S   DKPF   EIWL +K+    K  G DG+  +F  KSW+ +K ++  +F++F  N      V+ET   LI KK
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0637.5Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK
        ++N  S   DKPF   EIWL +K+    K  G DGY  +F  KSW+ +K ++  +F++F         V+ET   LI KK
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]7.4e-0737.35Show/hide
Query:  SLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKKID
        S++  ++ + ++PF   E+  AV   G  K+ G DGY  + F   W  LK D+V+V +EFF         +ET+ CLIPKK D
Subjt:  SLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKKID

XP_021852665.1 uncharacterized protein LOC110792162 [Spinacia oleracea]1.3e-0639.56Show/hide
Query:  MPKTQSLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFG------NVDETYTCLIPKKIDVAL
        M K + L+ + ++    P TT EI LA+K +   K  G DG+ ++FF  +W+ILKDD+ RV QEFF        V+ T   LIPK  +V +
Subjt:  MPKTQSLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFG------NVDETYTCLIPKKIDVAL

XP_023518084.1 uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo]6.0e-0940.24Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF------GNVDETYTCLIPKKID
        ++ +Q+   +  FT  E+  A++ +G+ KT G DG+ +EFF K WN ++ D++RVF +FF      GN++ETY  LI KK+D
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF------GNVDETYTCLIPKKID

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein6.1e-0737.5Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK
        ++N  S   DKPF   EIWL +K+    K  G DGY  +F  KSW+ +K ++  +F++F         V+ET   LI KK
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK

A0A5A7ULE1 LINE-1 retrotransposable element ORF2 protein3.6e-0737.5Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK
        ++N  S   DKPF   EIWL +K+    K  G DG+  +F  KSW+ +K ++  +F++F  N      V+ET   LI KK
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein1.0e-0636.25Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK
        ++N  S   DKPF   EIWL +K+    K  G DG+  +F  KSW+ +K ++  +F++F  N      V+ET    I KK
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein6.1e-0737.5Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK
        ++N  S   DKPF   EIWL +K+    K  G DGY  +F  KSW+ +K ++  +F++F         V+ET   LI KK
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGN------VDETYTCLIPKK

A0A6A2WMD5 Reverse transcriptase domain-containing protein7.9e-0734.15Show/hide
Query:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF-GNVDE-----TYTCLIPKKID
        +N    +F + PF+  E+W+AVK++  T+  G D +  +FF K W  +K +++R  +EF+ G V++     +Y  LIPKK++
Subjt:  LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF-GNVDE-----TYTCLIPKKID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAAACACAAAGCCTGAATAATGAACAAAGTAGGTTCCCTGACAAACCCTTCACAACAGGTGAGATTTGGTTAGCGGTTAAGGCTGTGGGCACCACCAAAACCTC
GGGGCGAGATGGTTACATTGCGGAATTCTTTAATAAGTCATGGAACATCCTAAAGGATGACCTAGTTAGAGTGTTCCAAGAATTTTTTGGCAATGTCGATGAAACATACA
CTTGCCTCATCCCAAAAAAGATTGATGTTGCACTTGGTTGTACAAAATCATTGCACGGGTTCTCTCAAACCGACTTAAGAAAGTTTTACCAACCACCATTTTGGAATACC
AATCTGCTCTTTTGGAAGGAAGACAAAATTCGGATGCTTCCCTTATTGCCAACAAAATCATTGAAGATTGACATAGAAAGAAGACTCAAGGAGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAAACACAAAGCCTGAATAATGAACAAAGTAGGTTCCCTGACAAACCCTTCACAACAGGTGAGATTTGGTTAGCGGTTAAGGCTGTGGGCACCACCAAAACCTC
GGGGCGAGATGGTTACATTGCGGAATTCTTTAATAAGTCATGGAACATCCTAAAGGATGACCTAGTTAGAGTGTTCCAAGAATTTTTTGGCAATGTCGATGAAACATACA
CTTGCCTCATCCCAAAAAAGATTGATGTTGCACTTGGTTGTACAAAATCATTGCACGGGTTCTCTCAAACCGACTTAAGAAAGTTTTACCAACCACCATTTTGGAATACC
AATCTGCTCTTTTGGAAGGAAGACAAAATTCGGATGCTTCCCTTATTGCCAACAAAATCATTGAAGATTGACATAGAAAGAAGACTCAAGGAGTGGTAG
Protein sequenceShow/hide protein sequence
MPKTQSLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGNVDETYTCLIPKKIDVALGCTKSLHGFSQTDLRKFYQPPFWNT
NLLFWKEDKIRMLPLLPTKSLKIDIERRLKEW