; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10007557 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007557
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationChr10:7060440..7063085
RNA-Seq ExpressionHG10007557
SyntenyHG10007557
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056003.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]1.7e-14690.03Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG
        MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRGG   +GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCG
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS

Query:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM
         KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQAVVKIGGH+FKGYLYDHGVE ARDGFPT+SNLHLGDGGS SSPVI+P+DVYGSS  RGGG+
Subjt:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM

Query:  AGGSGYGNPIN
        AGGSGYGN IN
Subjt:  AGGSGYGNPIN

KAG6588219.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]2.9e-13382.76Show/hide
Query:  MWPSS---RPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR------GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAG
        MWPSS   RP+A  YGHTA    DMVGLMASG+GVG+SVLPLLTGLAPSSV IEE NLMISR      GG GGGGVQF+GNN DGFG LGGGSSLNSG G
Subjt:  MWPSS---RPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR------GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAG

Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDAS
        TCHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ+L AA+ AAAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDAS

Query:  SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGSASSPVINPADVYGS
        SAADMS K+AKKLPEQ+RAPAVFKCVRVTAVE GGSGGNEYAYQAVVKIGGH+FKGYLYDHGVE AR+GFP LS+LHL   GDGGS SSP+I+P+DVYGS
Subjt:  SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGSASSPVINPADVYGS

Query:  STARGGGMAGGSGYGNPIN
        S  RGGG+AGGSGYGNPIN
Subjt:  STARGGGMAGGSGYGNPIN

XP_008450344.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]1.7e-14690.03Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG
        MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRGG   +GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCG
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS

Query:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM
         KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQAVVKIGGH+FKGYLYDHGVE ARDGFPT+SNLHLGDGGS SSPVI+P+DVYGSS  RGGG+
Subjt:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM

Query:  AGGSGYGNPIN
        AGGSGYGN IN
Subjt:  AGGSGYGNPIN

XP_011660164.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]2.3e-14690.03Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG
        MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLL+GLAPSSV IEEANLMISRGG   DGGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCG
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS

Query:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM
         KKAKKLPEQIRAPAVFKCVRVTAVEGG+  GGNEYAYQAVVKIGGH+FKGYLYDHGVE ARDGFP +SNLHLGDGGS SSPVI+PADVYGSST RGGG+
Subjt:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM

Query:  AGGSGYGNPIN
        AGGSGYGN IN
Subjt:  AGGSGYGNPIN

XP_038878596.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]8.4e-14991.99Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR----GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDC
        MWPSSRPLA+GYGHTAA   DMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISR    GG GGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDC
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR----GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDC

Query:  GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM
        GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQML AAS+ AA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM
Subjt:  GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM

Query:  SCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGG
        SCKKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQA+VKIGGHIFKGYLYDHGVE ARDGFPTLSNLHLGDGGS SSPVI+PADVYGSS ARGG 
Subjt:  SCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGG

Query:  MAGGSGYGNPIN
        +AGGSGYGNPIN
Subjt:  MAGGSGYGNPIN

TrEMBL top hitse value%identityAlignment
A0A0A0M099 Transcription factor1.1e-14690.03Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG
        MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLL+GLAPSSV IEEANLMISRGG   DGGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCG
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS

Query:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM
         KKAKKLPEQIRAPAVFKCVRVTAVEGG+  GGNEYAYQAVVKIGGH+FKGYLYDHGVE ARDGFP +SNLHLGDGGS SSPVI+PADVYGSST RGGG+
Subjt:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM

Query:  AGGSGYGNPIN
        AGGSGYGN IN
Subjt:  AGGSGYGNPIN

A0A1S3BQ17 protein LATERAL ROOT PRIMORDIUM 18.4e-14790.03Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG
        MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRGG   +GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCG
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS

Query:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM
         KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQAVVKIGGH+FKGYLYDHGVE ARDGFPT+SNLHLGDGGS SSPVI+P+DVYGSS  RGGG+
Subjt:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM

Query:  AGGSGYGNPIN
        AGGSGYGN IN
Subjt:  AGGSGYGNPIN

A0A5A7UJ85 Protein LATERAL ROOT PRIMORDIUM 18.4e-14790.03Show/hide
Query:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG
        MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRGG   +GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCG
Subjt:  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS

Query:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM
         KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQAVVKIGGH+FKGYLYDHGVE ARDGFPT+SNLHLGDGGS SSPVI+P+DVYGSS  RGGG+
Subjt:  CKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGM

Query:  AGGSGYGNPIN
        AGGSGYGN IN
Subjt:  AGGSGYGNPIN

A0A6J1F4X3 protein LATERAL ROOT PRIMORDIUM 1-like isoform X13.1e-13382.91Show/hide
Query:  MWP---SSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGGD---GGGGVQFNGNNLDGFGILGGGSSLNSGAGTCH
        MWP   S+RP+A  YGHTA    DMVGLMASG+GVG+SVLPLLTGLAPSSV IEE NLMISRGGD   GGGGVQF+GNN DGFG LGGGSSLNSG GTCH
Subjt:  MWP---SSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGGD---GGGGVQFNGNNLDGFGILGGGSSLNSGAGTCH

Query:  DCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        DCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ+L AA  AAAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAA
Subjt:  DCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGSASSPVINPADVYGSSTA
        DMS K+AKKLPEQ+RAPAVFKCVRVTAVE GG+GGNEYAYQAVVKIGGH+FKGYLYDHGVE AR+GFP LS+LHL   GDGGS SSP+I+P+DVYGSS  
Subjt:  DMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGSASSPVINPADVYGSSTA

Query:  RGGGMAGGSGYGNPIN
        RGGG+AG SGYGNPIN
Subjt:  RGGGMAGGSGYGNPIN

A0A6J1ID91 protein LATERAL ROOT PRIMORDIUM 1-like isoform X12.4e-13382.7Show/hide
Query:  MWP---SSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR-----GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGT
        MWP   SSRP+A  YGHTA    DMVGLMASG+GVG+SVLPLLTG+APSSV IEE NLMISR     GG GGGGVQF+GNN DGFG LGGGSSLNSG GT
Subjt:  MWP---SSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR-----GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGT

Query:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASS
        CHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ+L AA  AAAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  S
Subjt:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASS

Query:  AADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGSASSPVINPADVYGSS
        AADMS K+AKKLPEQ+RAPAVFKCVRVTAVE GGSGGNEYAYQAVVKIGGH+FKGYLYDHGVE AR+GFP LS+LHL   GDGGS SSP+I+P+DVYGSS
Subjt:  AADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGSASSPVINPADVYGSS

Query:  TARGGGMAGGSGYGNPIN
          RGGG+AGGSGYGNPIN
Subjt:  TARGGGMAGGSGYGNPIN

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 21.6e-3043.93Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDAS
        +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +    GGG+ SG   GG        +  T   TS+S+   PS   S
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDAS

Query:  SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTAR
        +  +M        P ++ + A+F+CV+++ V+ G G  +YAYQ  V IGGH+FKG LYD G        P  S +  G GGS           + SS+A 
Subjt:  SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTAR

Query:  GGGMAGGSGYGNPI
        GGG  GG  +  P+
Subjt:  GGGMAGGSGYGNPI

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.6e-5448.82Show/hide
Query:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP
        RGFDCSTHVKSTWV AARRRERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA 
Subjt:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP

Query:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY
        AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD G+E  ++GFP++S+LHLG      +G SAS+P+++P + VYG     GGG +GG  Y
Subjt:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY

Q9LQZ5 Protein SHI RELATED SEQUENCE 52.4e-2943.65Show/hide
Query:  GGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH---
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER      ++ A+      SS  T   K+ R  +     +     
Subjt:  GGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH---

Query:  ----TSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVE
            ++ +NT   + +++S  ++S    + LP ++ +PA+F+CVRV+++E       YAYQ  V IGGHIFKG LYD G E
Subjt:  ----TSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVE

Q9SD40 Protein SHI RELATED SEQUENCE 16.2e-3039.91Show/hide
Query:  ILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHT
        I  GGS   SG  +C DCGNQAKKDCSH RCR+CCKSRGF+CSTHV+STWVPAA+RRERQ   A  +                  + +L   ++    H 
Subjt:  ILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHT

Query:  STSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDG---FPTLSNLHLGDGGSAS
              + S   +     S  +    P ++ + AVF+CVRV++VE G    E+AYQ  V IGGHIFKG LYD G  ++  G            G GG+  
Subjt:  STSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDG---FPTLSNLHLGDGGSAS

Query:  SPVINPADV----YGSSTARGGGMAGGS
          +I    V      SST   GG+   S
Subjt:  SPVINPADV----YGSSTARGGGMAGGS

Q9XGX0 Protein SHORT INTERNODES2.2e-2735.52Show/hide
Query:  EEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAAC
        +  +L  S  G G G    +     G  ++   S   SG  +C DCGNQ+KKDCSH RCR+CCKSRG DC THVKSTWVPAA+RRERQ   +  +     
Subjt:  EEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAAC

Query:  GGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYD
        GG          ++   I +++T+ ++T   +  T   +  +            P ++ + AVF+CVRV++V+      EYAY+  V IGGH+FKG LYD
Subjt:  GGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYD

Query:  HGV---EAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGMAGGSGYGNPIN
         G     ++  G   L+ +  G   S+SSP ++  +    ST+          Y  PIN
Subjt:  HGV---EAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGMAGGSGYGNPIN

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related4.4e-3139.91Show/hide
Query:  ILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHT
        I  GGS   SG  +C DCGNQAKKDCSH RCR+CCKSRGF+CSTHV+STWVPAA+RRERQ   A  +                  + +L   ++    H 
Subjt:  ILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHT

Query:  STSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDG---FPTLSNLHLGDGGSAS
              + S   +     S  +    P ++ + AVF+CVRV++VE G    E+AYQ  V IGGHIFKG LYD G  ++  G            G GG+  
Subjt:  STSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDG---FPTLSNLHLGDGGSAS

Query:  SPVINPADV----YGSSTARGGGMAGGS
          +I    V      SST   GG+   S
Subjt:  SPVINPADV----YGSSTARGGGMAGGS

AT4G36260.1 Lateral root primordium (LRP) protein-related1.2e-3143.93Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDAS
        +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +    GGG+ SG   GG        +  T   TS+S+   PS   S
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDAS

Query:  SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTAR
        +  +M        P ++ + A+F+CV+++ V+ G G  +YAYQ  V IGGH+FKG LYD G        P  S +  G GGS           + SS+A 
Subjt:  SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTAR

Query:  GGGMAGGSGYGNPI
        GGG  GG  +  P+
Subjt:  GGGMAGGSGYGNPI

AT5G12330.1 Lateral root primordium (LRP) protein-related1.2e-5548.82Show/hide
Query:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP
        RGFDCSTHVKSTWV AARRRERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA 
Subjt:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP

Query:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY
        AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD G+E  ++GFP++S+LHLG      +G SAS+P+++P + VYG     GGG +GG  Y
Subjt:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY

AT5G12330.2 Lateral root primordium (LRP) protein-related1.2e-5548.82Show/hide
Query:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP
        RGFDCSTHVKSTWV AARRRERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA 
Subjt:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP

Query:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY
        AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD G+E  ++GFP++S+LHLG      +G SAS+P+++P + VYG     GGG +GG  Y
Subjt:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY

AT5G12330.4 Lateral root primordium (LRP) protein-related1.2e-5548.82Show/hide
Query:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP
        RGFDCSTHVKSTWV AARRRERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA 
Subjt:  RGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP

Query:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY
        AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD G+E  ++GFP++S+LHLG      +G SAS+P+++P + VYG     GGG +GG  Y
Subjt:  AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLG------DGGSASSPVINPAD-VYGSSTARGGGMAGGSGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCCTCGTCCAGACCCCTTGCCGTCGGTTATGGCCACACGGCGGCCCAGGCGCCGGACATGGTGGGTCTCATGGCCTCGGGCTTCGGAGTCGGCGTTAGCGTTTT
GCCTCTCCTTACCGGCCTTGCGCCGTCGAGTGTAGAAATTGAGGAGGCTAATTTAATGATCAGCCGCGGCGGCGACGGTGGCGGCGGAGTTCAATTCAATGGGAATAATT
TGGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGATTGCAGCCACCGGCGGTGCCGC
AGCTGCTGTAAAAGCCGTGGATTTGATTGTTCTACTCACGTGAAGAGCACGTGGGTTCCGGCCGCTCGGCGAAGAGAACGTCAGATGTTGGGCGCAGCGTCAGAAGCGGC
CGCCGCATGCGGTGGCGGGACATCATCTGGGTCAACCTCCGGCGGGAAGAAGCCGAGACTGATTGCTTCACAGACAACTACCAATTCCCATACTTCCACTTCCAACACTC
CAACACCAAGCTTCGACGCTTCCTCAGCCGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACG
GCGGTGGAGGGTGGCAGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATATTTTTAAAGGCTATTTATACGACCATGGAGTGGAAGCTGCTAG
AGATGGGTTTCCAACGTTGTCCAATTTGCATCTCGGAGATGGCGGTTCGGCATCATCACCGGTCATTAATCCTGCTGACGTTTATGGCAGCTCCACCGCTCGCGGCGGGG
GAATGGCTGGGGGTTCTGGCTATGGTAATCCCATAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCCTCGTCCAGACCCCTTGCCGTCGGTTATGGCCACACGGCGGCCCAGGCGCCGGACATGGTGGGTCTCATGGCCTCGGGCTTCGGAGTCGGCGTTAGCGTTTT
GCCTCTCCTTACCGGCCTTGCGCCGTCGAGTGTAGAAATTGAGGAGGCTAATTTAATGATCAGCCGCGGCGGCGACGGTGGCGGCGGAGTTCAATTCAATGGGAATAATT
TGGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGATTGCAGCCACCGGCGGTGCCGC
AGCTGCTGTAAAAGCCGTGGATTTGATTGTTCTACTCACGTGAAGAGCACGTGGGTTCCGGCCGCTCGGCGAAGAGAACGTCAGATGTTGGGCGCAGCGTCAGAAGCGGC
CGCCGCATGCGGTGGCGGGACATCATCTGGGTCAACCTCCGGCGGGAAGAAGCCGAGACTGATTGCTTCACAGACAACTACCAATTCCCATACTTCCACTTCCAACACTC
CAACACCAAGCTTCGACGCTTCCTCAGCCGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACG
GCGGTGGAGGGTGGCAGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATATTTTTAAAGGCTATTTATACGACCATGGAGTGGAAGCTGCTAG
AGATGGGTTTCCAACGTTGTCCAATTTGCATCTCGGAGATGGCGGTTCGGCATCATCACCGGTCATTAATCCTGCTGACGTTTATGGCAGCTCCACCGCTCGCGGCGGGG
GAATGGCTGGGGGTTCTGGCTATGGTAATCCCATAAATTGA
Protein sequenceShow/hide protein sequence
MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCR
SCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVT
AVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGSASSPVINPADVYGSSTARGGGMAGGSGYGNPIN