CuGenDBv2

Gene ID	HG10007602
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Photosystem I assembly protein Ycf4
Genome location	Chr10:7937522..7937881
RNA-Seq Expression	HG10007602
Synteny	HG10007602
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AHM91182.1 photosystem I assembly protein ycf4, partial [Lagenaria siceraria]

7.4e-61

100

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

ASY96369.1 photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis]

7.4e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

YP_004841794.1 photosystem I assembly protein ycf4 [Cucumis melo subsp. melo]

7.4e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

YP_009004055.1 photosystem I assembly protein ycf4 [Cucumis hystrix]

7.4e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

YP_009317397.1 photosystem I assembly protein Ycf4 [Coccinia grandis]

7.4e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE82 Photosystem I assembly protein Ycf4

3.6e-61

100

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

A0A1S4EU22 Photosystem I assembly protein Ycf4

3.6e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

A0A1X9Q1L1 Photosystem I assembly protein Ycf4

3.6e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

A0A218KG38 Photosystem I assembly protein Ycf4

3.6e-61

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

A0A249S031 Photosystem I assembly protein Ycf4

3.6e-61

100

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

SwissProt top hits

e value

%identity

Alignment

A0ZZ46 Photosystem I assembly protein Ycf4

2.0e-61

95.8

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

Q09G35 Photosystem I assembly protein Ycf4

5.0e-60

94.12

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRF MKDIQSIRIEVKEG+Y RRVLYMEIRGQGAIPLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

Q2L913 Photosystem I assembly protein Ycf4

2.0e-61

95.8

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

Q2MIH6 Photosystem I assembly protein Ycf4

5.0e-60

93.28

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFL+KDIQS+RIEVKEGIYARRVLYM+IRGQG+IPLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

Q2QD78 Photosystem I assembly protein Ycf4

9.7e-64

100

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00520.1 unfolded protein binding

1.8e-57

89.92

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFIS YLWCTILWNVGSGYD FDRKE IV IFRWGFPGK+RRIFLRF MKDIQSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T RE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIEVF
        IEQKAAELAYFLRVPIEVF
Subjt:  IEQKAAELAYFLRVPIEVF

Sequences

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CDS sequence

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ATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGT
GTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCAC
GTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTAT
TTCTTGCGTGTACCAATTGAAGTTTTTTGA

mRNA sequence

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Protein sequence

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MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAY
FLRVPIEVF

HG10007602 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome