CuGenDBv2

Gene ID	HG10007740
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	zf-RVT domain-containing protein
Genome location	Chr10:11385290..11388718
RNA-Seq Expression	HG10007740
Synteny	HG10007740
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4367202.1 hypothetical protein F8388_006510 [Cannabis sativa]

3.2e-12

31.1

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI ++ ED+ IW F K G Y+VKSGY+ A   +      S +DQ+  WWK  W+L                 + + TNL  RGM + P C+ C R +ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKL-KEQFSSII
        ++HAL++C + +      W +      + +S G          +++   E R KL KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKL-KEQFSSII

KAF4384439.1 hypothetical protein G4B88_028513 [Cannabis sativa]

5.4e-12

30.06

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI  + ED+ IW F K G Y+VKSGYR A   +      S +DQ+  WWK  W L                 + + TNL  RGM +   C+ C R  ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII
        ++HAL++C + +      W +    N + +S G        + ++E+  ++   +KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII

KAF4391669.1 hypothetical protein F8388_005434 [Cannabis sativa]

5.4e-12

28.83

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI ++ ED+ IW F K G Y+VKSGYR A   +      S +DQ+  WWK  W+L                 + + TNL  RGM + P C+ C + ++T
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII
        ++HAL++C + +      W +      + +S G        + ++E+  ++    KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII

KAF4391976.1 hypothetical protein F8388_004305 [Cannabis sativa]

4.9e-13

30.67

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI ++ ED+ IW F K G Y+VKSGYR A   +      S +DQ+  WWK  W L                 + + TNL  RGM + P C+ C R  ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII
        ++HAL++C + +      W +    N + +S G        + ++E+  ++    KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

1.4e-12

25.1

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Query:  IPIRS-NREDICIWHFNKHGEYLVKSGYRSAIFDRFMRNGSRLDQSFGWWKRLWAL----------------KIHSLTNLKKRGMDVIPGCSICRRKKET
        +PI S N +D  +WH++K G Y V+SGY+  +  +     +  +     W  +W L                 I +  NL  RG+  +P C+IC  ++E+
Subjt:  IPIRS-NREDICIWHFNKHGEYLVKSGYRSAIFDRFMRNGSRLDQSFGWWKRLWAL----------------KIHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRAR--------------------------------------VACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSI
        + HA F C RAR                                      +A IT W IW D N + + + +  VE +CEW+  +           +S  
Subjt:  VTHALFDCSRAR--------------------------------------VACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSI

Query:  IGSKIYDI-------SALNI-LHVDAACRMDSSVMGYGGVISFLSGYLMAAVHGFQKISRSPL
          S    +       S++++ L+ DAACR  S+   +G +I   S  L+AA         SPL
Subjt:  IGSKIYDI-------SALNI-LHVDAACRMDSSVMGYGGVISFLSGYLMAAVHGFQKISRSPL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DX30 uncharacterized protein LOC111024874

6.9e-13

25.1

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Query:  IPIRS-NREDICIWHFNKHGEYLVKSGYRSAIFDRFMRNGSRLDQSFGWWKRLWAL----------------KIHSLTNLKKRGMDVIPGCSICRRKKET
        +PI S N +D  +WH++K G Y V+SGY+  +  +     +  +     W  +W L                 I +  NL  RG+  +P C+IC  ++E+
Subjt:  IPIRS-NREDICIWHFNKHGEYLVKSGYRSAIFDRFMRNGSRLDQSFGWWKRLWAL----------------KIHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRAR--------------------------------------VACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSI
        + HA F C RAR                                      +A IT W IW D N + + + +  VE +CEW+  +           +S  
Subjt:  VTHALFDCSRAR--------------------------------------VACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSI

Query:  IGSKIYDI-------SALNI-LHVDAACRMDSSVMGYGGVISFLSGYLMAAVHGFQKISRSPL
          S    +       S++++ L+ DAACR  S+   +G +I   S  L+AA         SPL
Subjt:  IGSKIYDI-------SALNI-LHVDAACRMDSSVMGYGGVISFLSGYLMAAVHGFQKISRSPL

A0A7J6F936 CCHC-type domain-containing protein

1.5e-12

31.1

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI ++ ED+ IW F K G Y+VKSGY+ A   +      S +DQ+  WWK  W+L                 + + TNL  RGM + P C+ C R +ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKL-KEQFSSII
        ++HAL++C + +      W +      + +S G          +++   E R KL KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKL-KEQFSSII

A0A7J6H9M1 Uncharacterized protein

2.4e-13

30.67

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI ++ ED+ IW F K G Y+VKSGYR A   +      S +DQ+  WWK  W L                 + + TNL  RGM + P C+ C R  ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII
        ++HAL++C + +      W +    N + +S G        + ++E+  ++    KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII

A0A7J6HAE9 Uncharacterized protein

2.6e-12

30.06

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI  + ED+ IW F K G Y+VKSGYR A   +      S +DQ+  WWK  W L                 + + TNL  RGM +   C+ C R  ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII
        ++HAL++C + +      W +    N + +S G        + ++E+  ++   +KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII

A0A803PHH5 Uncharacterized protein

5.2e-13

30.06

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Query:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET
        IPI ++ ED+ IW F K G Y+VKSGYR A   +      S +DQ+  WWK  W+L                 +   TNL  RGM + P C+ C R +ET
Subjt:  IPIRSNREDICIWHFNKHGEYLVKSGYRSA-IFDRFMRNGSRLDQSFGWWKRLWALK----------------IHSLTNLKKRGMDVIPGCSICRRKKET

Query:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII
        ++HAL++C + +      W +      + +S G        + ++E+  ++    KE+F  ++
Subjt:  VTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEYSREVRVKLKEQFSSII

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G09510.1 Ribonuclease H-like superfamily protein

2.3e-08

32.09

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Query:  SKTLAFKEINLLGVIDGIIPIRSNREDICIWHFNKHGEYLVKSGYRSAIFDRFMRNGSRLDQSFG---WWKRLWALKI-----HSL-----------TNL
        SK   F + +  G I  I   +S + D  IW++N  GEY V+SGY     D    N   ++   G      R+W L I     H L             L
Subjt:  SKTLAFKEINLLGVIDGIIPIRSNREDICIWHFNKHGEYLVKSGYRSAIFDRFMRNGSRLDQSFG---WWKRLWALKI-----HSL-----------TNL

Query:  KKRGMDVIPGCSICRRKKETVTHALFDCSRARVA
          RGM + P C  C R+ E++ HALF C  A +A
Subjt:  KKRGMDVIPGCSICRRKKETVTHALFDCSRARVA

Sequences

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CDS sequence

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ATGGGTGGAGATTTACAAATTTATGAGGCCAACCTAACTCGAAGCTTAGACATCAGACTTGGCAGTTACTCCATCGTCTGTCAAATCATGATAACTCTGCTTGGGTTGTG
GGAGGCGATCTTAATGAGATCTTATGGATGGTGGAAAAAGAAGGTGGCTTTCAGCGGGATGAGTCTCTTATGGCCAATTTTCGCTCAACACTGGATGACTGTTCACTCCA
AGACCTTGGCTTTCAAGGAGATAAATTTACTTGGTGTAATAGATGGGATCATCCCCATTAGGAGTAATAGGGAAGATATATGTATTTGGCATTTCAACAAGCATGGTGAA
TACTTAGTCAAGAGCGGTTATAGAAGTGCTATTTTCGATAGATTTATGAGAAATGGATCTAGGTTGGATCAATCATTTGGGTGGTGGAAGAGATTATGGGCTCTAAAAAT
TCATAGTTTGACAAACCTCAAGAAGCGGGGTATGGATGTTATTCCAGGTTGTTCGATTTGTAGAAGAAAAAAGGAAACTGTGACACATGCTTTGTTTGATTGTTCTAGGG
CCAGGGTTGCTTGCATTACCGCCTGGGCTATTTGGGGAGACATGAATAAAGTTCATAACTCGGAAGGTATCCCTTCTGTGGAGCATCGGTGTGAGTGGATTTTGGAGTAT
TCAAGGGAAGTTAGGGTGAAACTAAAAGAGCAATTTAGTTCTATTATTGGTTCAAAAATTTACGATATTAGTGCTTTGAACATCCTTCATGTTGATGCAGCATGTAGAAT
GGATTCCTCGGTGATGGGTTATGGTGGGGTTATTAGTTTCCTGTCTGGCTATTTGATGGCTGCTGTGCATGGTTTTCAAAAGATTTCTCGGAGTCCGTTGGGAGCTTAA

mRNA sequence

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Protein sequence

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MGGDLQIYEANLTRSLDIRLGSYSIVCQIMITLLGLWEAILMRSYGWWKKKVAFSGMSLLWPIFAQHWMTVHSKTLAFKEINLLGVIDGIIPIRSNREDICIWHFNKHGE
YLVKSGYRSAIFDRFMRNGSRLDQSFGWWKRLWALKIHSLTNLKKRGMDVIPGCSICRRKKETVTHALFDCSRARVACITAWAIWGDMNKVHNSEGIPSVEHRCEWILEY
SREVRVKLKEQFSSIIGSKIYDISALNILHVDAACRMDSSVMGYGGVISFLSGYLMAAVHGFQKISRSPLGA

HG10007740 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome