; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10007775 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007775
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr10:12850227..12853216
RNA-Seq ExpressionHG10007775
SyntenyHG10007775
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        +   +C+ N KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]3.0e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
TrEMBL top hitse value%identityAlignment
A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein6.5e-1445.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        +   +C+ N KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.5e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein1.5e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein1.5e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.5e-1345.68Show/hide
Query:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
        + I +C+   KT+K +++F+  A+ LW IWLERN RIF    ++   +W D+ +LAG W  RS+LF +Y  S+IALNL AF
Subjt:  IVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLAGCWAHRSNLFKSYSPSTIALNLTAF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCCAATTCAACTCATGACTACCCATTTACCACTATTTTGGTTCCCTTGGGCCTAAATCAGACTTGCAAAATTGACGCTTTCTCATATGGCTGTCGTAAGCCTCG
TAACTTGGAGATGCAGGTTGTACGTAGCAGAGTTATGTTCACCATCATCATAATTGTAATAGATCTTTGCAACCACAATCTCAAGACTAGAAAAAGGATTGTCATTTTCA
GCATCCAAGCGGCTATTCTGTGGACTATCTGGCTCGAGCGCAACAACCGTATTTTCAAAGAGGTTAGCAGAAGTACTGTTAACATGTGGATTGATGTTTGCTCCCTAGCT
GGTTGTTGGGCTCATAGAAGCAATCTCTTCAAAAGTTACAGTCCATCCACTATTGCTTTAAATCTTACAGCTTTTTGTAACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCCAATTCAACTCATGACTACCCATTTACCACTATTTTGGTTCCCTTGGGCCTAAATCAGACTTGCAAAATTGACGCTTTCTCATATGGCTGTCGTAAGCCTCG
TAACTTGGAGATGCAGGTTGTACGTAGCAGAGTTATGTTCACCATCATCATAATTGTAATAGATCTTTGCAACCACAATCTCAAGACTAGAAAAAGGATTGTCATTTTCA
GCATCCAAGCGGCTATTCTGTGGACTATCTGGCTCGAGCGCAACAACCGTATTTTCAAAGAGGTTAGCAGAAGTACTGTTAACATGTGGATTGATGTTTGCTCCCTAGCT
GGTTGTTGGGCTCATAGAAGCAATCTCTTCAAAAGTTACAGTCCATCCACTATTGCTTTAAATCTTACAGCTTTTTGTAACAATTAA
Protein sequenceShow/hide protein sequence
MISNSTHDYPFTTILVPLGLNQTCKIDAFSYGCRKPRNLEMQVVRSRVMFTIIIIVIDLCNHNLKTRKRIVIFSIQAAILWTIWLERNNRIFKEVSRSTVNMWIDVCSLA
GCWAHRSNLFKSYSPSTIALNLTAFCNN