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HG10007812 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10007812
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionexosome complex component CSL4
Genome locationChr10:13972814..13990527
RNA-Seq ExpressionHG10007812
SyntenyHG10007812
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR019495 - Exosome complex component CSL4, C-terminal
IPR025721 - Exosome complex component, N-terminal domain
IPR039771 - Exosome complex component Csl4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588300.1 Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.4e-6190.14Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDS  SR TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKF+G+IRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

KAG7020862.1 Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma]3.4e-6190.14Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDS  SR TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKF+G+IRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

XP_008465048.1 PREDICTED: exosome complex component CSL4 [Cucumis melo]4.8e-6392.25Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE+E TEFVTPGE+LG FSD KPGRGAYVADNTVYASLSGFRRIIPPP+DSS  RSTVEVTGHKAHGAVPAPGSIVIARVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

XP_023530831.1 exosome complex component CSL4 [Cucurbita pepo subsp. pepo]2.4e-6290.28Show/hide
Query:  MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCV
        MTMKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDS  SR TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCV
Subjt:  MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCV

Query:  GPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        GPKSVKEKF+G+IRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  GPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

XP_038879159.1 exosome complex component CSL4 [Benincasa hispida]4.8e-6391.55Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEETTEFVTPGEVLG FSD +PGRGAYV +NTVYASLSGFRR IPPPTDSS  RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKFTGIIRQQDVRA EIDKVDMHLSF PGD+VKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

TrEMBL top hitse value%identityAlignment
A0A0A0L935 Uncharacterized protein3.7e-6190.14Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE++ TEFVTPGEVLG FSD KPGRGAYV DNTVYASLSGFRRII PP+DSS  RSTVEVTGHKAHGAVPAPGSIVI RVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

A0A1S3CMV8 exosome complex component CSL42.3e-6392.25Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE+E TEFVTPGE+LG FSD KPGRGAYVADNTVYASLSGFRRIIPPP+DSS  RSTVEVTGHKAHGAVPAPGSIVIARVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSS--RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

A0A6J1DE54 exosome complex component CSL48.5e-5885.92Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKE EE  T+FVTPGEVLGK SD+K G+GAYVA+NTVYASLSGFRRI+PPP +S  SR TVEVTGHKAHGAVPAPGS+VIARVT VMS+MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

A0A6J1F6G8 exosome complex component CSL46.3e-6189.44Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDS  SR TVEVTGHKAHGAVPAPGSIV ARVTKVM +MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        KSVKEKF+G+IRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

A0A6J1IH52 exosome complex component CSL42.8e-6189.51Show/hide
Query:  TMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVG
        TMK GEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDS  SR TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCVG
Subjt:  TMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVG

Query:  PKSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
        PKSVKEKF+G+IRQQDVRATEIDKVDMHLSF PGDIVKALV+S
Subjt:  PKSVKEKFTGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS

SwissProt top hitse value%identityAlignment
O59821 Exosome complex component csl47.5e-1134.88Show/hide
Query:  VTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQ
        V PG+V+ +      G G     + + ++ +G   I  P  +S     +V   +    +P  GSIV+ARV+++ ++ A+ +I  V     K++F G+I  
Subjt:  VTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQ

Query:  QDVRATEIDKVDMHLSFCPGDIVKALVVS
        QD+RATE +KV +  SF PGDIV+ALV+S
Subjt:  QDVRATEIDKVDMHLSFCPGDIVKALVVS

P53859 Exosome complex component CSL42.1e-0529.6Show/hide
Query:  PPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPK----------------------------------SVKEKFTGIIRQQDVR
        P T+  R T +   +     +P  G IV+ RVT++  + A+ +I+ V  K                                   + E F GIIR QDVR
Subjt:  PPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPK----------------------------------SVKEKFTGIIRQQDVR

Query:  ATEIDKVDMHLSFCPGDIVKALVVS
        +T+ D+V +   F PGDIV+A V+S
Subjt:  ATEIDKVDMHLSFCPGDIVKALVVS

Q9DAA6 Exosome complex component CSL41.5e-1434.62Show/hide
Query:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIR
        +  PGE L    +  PG G Y     +++SL+G   ++    + +   V V        +P  G++V  +V+ + S+ A   I+ VG   +K  F G IR
Subjt:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIR

Query:  QQDVRATEIDKVDMHLSFCPGDIVKALVVS
        ++D+RATE DKV+++ SF PGDIV A V+S
Subjt:  QQDVRATEIDKVDMHLSFCPGDIVKALVVS

Q9Y3B2 Exosome complex component CSL43.9e-1536.15Show/hide
Query:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIR
        +  PGE L    +  PG G Y     +++SL+G   ++    + +   V V        +P  G+IV  +V+ + S+ A   I+ VG   +K  F G IR
Subjt:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIR

Query:  QQDVRATEIDKVDMHLSFCPGDIVKALVVS
        ++DVRATE DKV+++ SF PGDIV A V+S
Subjt:  QQDVRATEIDKVDMHLSFCPGDIVKALVVS

Arabidopsis top hitse value%identityAlignment
AT5G38890.1 Nucleic acid-binding, OB-fold-like protein3.1e-4465.19Show/hide
Query:  TTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKF
        TT  VTPG+V+GK ++ K G+GAYV D T+YASL+G  RI+ P  +S   R+ VEVTGHKAHG +P  GS+VIARVTKVM+KMA+ DI+CVG K+V+E F
Subjt:  TTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDS--SRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKF

Query:  TGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS
         G+IRQQDVRATEIDKVDMH SF  GDIV+A+V+S
Subjt:  TGIIRQQDVRATEIDKVDMHLSFCPGDIVKALVVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAAACCTGGAAGAGGCGCTTATGTCGCCGACAA
CACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGAGATCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAG
CTCCAGGATCTATTGTCATTGCTCGTGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAGAAGTTTACGGGAATT
ATAAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTTGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCCTGAAAT
TCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAAACCTGGAAGAGGCGCTTATGTCGCCGACAA
CACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGAGATCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAG
CTCCAGGATCTATTGTCATTGCTCGTGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAGAAGTTTACGGGAATT
ATAAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTTGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCCTGAAAT
TCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG
Protein sequenceShow/hide protein sequence
MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGI
IRQQDVRATEIDKVDMHLSFCPGDIVKALVVSFLPEIPLLHVHKGCKRQT