; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008047 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008047
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosomal protein
Genome locationChr10:19085089..19090787
RNA-Seq ExpressionHG10008047
SyntenyHG10008047
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000473 - Ribosomal protein L36
IPR025124 - Domain of unknown function DUF4050
IPR035977 - Ribosomal protein L36 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587898.1 hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5748.47Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPVFLPQSPLYLFPITG
        MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE LPSHSS  GLASLIPQK EPTM              +  
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPVFLPQSPLYLFPITG

Query:  FWFSLNRCPSLRFWLNIN--------HGDAEQFFRC----------------VDQPL--IRLHG------------------------------------
          FSLNRCPSLRFWLNIN             + F C                VD+P   +R+ G                                    
Subjt:  FWFSLNRCPSLRFWLNIN--------HGDAEQFFRC----------------VDQPL--IRLHG------------------------------------

Query:  ------------------------------TRLQWI-GSSTTKATEETQQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLY
                                       RLQWI GSS++  T++TQQ++KAKISWRATYDSLL TRQ FPHPIPLSEMV FLVE  + +G++
Subjt:  ------------------------------TRLQWI-GSSTTKATEETQQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLY

KAG6589849.1 hypothetical protein SDJN03_15272, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5549.16Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPVFLPQSPLYLFPITG
        MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQE+LPSHSS R + S IP                   F   G
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPVFLPQSPLYLFPITG

Query:  FW----FSLNRCPSLRFWLNIN--------HGDAEQFFRC----------------VDQPL--IRLHG--------------------------------
        FW    F LNRCPSLRF L IN             + F C                VD+P   +R+ G                                
Subjt:  FW----FSLNRCPSLRFWLNIN--------HGDAEQFFRC----------------VDQPL--IRLHG--------------------------------

Query:  ----------------------------------TRLQWIGSSTTKATEETQQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD
                                          TRLQWIGSS T  T+ETQ+RQKAKISWRATYDSLLGTRQPFPH IPLSEMVNFLVEVWEQEGLYD
Subjt:  ----------------------------------TRLQWIGSSTTKATEETQQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD

OIW18580.1 hypothetical protein TanjilG_13332 [Lupinus angustifolius]2.1e-3943.55Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSR-NEVKQEVLPSHSSGRGLASLIPQKQEPTML---------------
        MKVR+SVKKMCEFCRTVKRRGRV++ C++NPKHKQRQG+STFA+EG S  L S  +  KQE++P+HSS  G ASL PQ+   +ML               
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSR-NEVKQEVLPSHSSGRGLASLIPQKQEPTML---------------

Query:  -PVFLPQSPLYLFPI-----------TGFWF---------------SLNRCPSLRFWLNINHGD--AEQFFRCVDQPLIRLHGTRLQWIGSSTTKATEET
         PV     P     I            GFW                S++   +L   L  ++G   A      V+Q L+  + +RL W GSS T   +++
Subjt:  -PVFLPQSPLYLFPI-----------TGFWF---------------SLNRCPSLRFWLNINHGD--AEQFFRCVDQPLIRLHGTRLQWIGSSTTKATEET

Query:  QQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD
        QQ+++  ++W ATY+SLLGTRQ F   +PLSEMV FLV+VWE EG+YD
Subjt:  QQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]4.5e-3490.48Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML
        MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE+LPSHSS  GLASLIPQK EPTML
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]1.6e-3491.67Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML
        MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGP PSLFSR+EVKQE+LPSHSS  GLASLIPQK EPTML
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML

TrEMBL top hitse value%identityAlignment
A0A1S3B8W2 Ribosomal protein5.4e-3388.1Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML
        MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE+LPS  S  GLASLIPQK EPTML
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML

A0A4P1RU48 Ribosomal protein1.0e-3943.55Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSR-NEVKQEVLPSHSSGRGLASLIPQKQEPTML---------------
        MKVR+SVKKMCEFCRTVKRRGRV++ C++NPKHKQRQG+STFA+EG S  L S  +  KQE++P+HSS  G ASL PQ+   +ML               
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSR-NEVKQEVLPSHSSGRGLASLIPQKQEPTML---------------

Query:  -PVFLPQSPLYLFPI-----------TGFWF---------------SLNRCPSLRFWLNINHGD--AEQFFRCVDQPLIRLHGTRLQWIGSSTTKATEET
         PV     P     I            GFW                S++   +L   L  ++G   A      V+Q L+  + +RL W GSS T   +++
Subjt:  -PVFLPQSPLYLFPI-----------TGFWF---------------SLNRCPSLRFWLNINHGD--AEQFFRCVDQPLIRLHGTRLQWIGSSTTKATEET

Query:  QQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD
        QQ+++  ++W ATY+SLLGTRQ F   +PLSEMV FLV+VWE EG+YD
Subjt:  QQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD

A0A5A7U4L3 Ribosomal protein5.4e-3388.1Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML
        MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE+LPS  S  GLASLIPQK EPTML
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML

A0A6J1EZS5 Ribosomal protein2.2e-3490.48Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML
        MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE+LPSHSS  GLASLIPQK EPTML
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML

A0A6J1I4R0 Ribosomal protein6.4e-3489.29Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML
        MKVRASVKKMCEFCRTV+RRGRVYIYCSSNPKHKQRQGLSTFASE PSPSLFSR+EVK+++LPSHSS  GLASLIPQK EPTML
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTML

SwissProt top hitse value%identityAlignment
A5VLI2 50S ribosomal protein L361.8e-0976.32Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L361.8e-0976.32Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L361.4e-0976.32Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

P73300 50S ribosomal protein L364.7e-1076.32Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVRASVKKMC+ CR ++RRGRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L361.4e-0976.32Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Arabidopsis top hitse value%identityAlignment
AT1G15350.1 unknown protein3.5e-1652.63Show/hide
Query:  VDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWR-ATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD
        V+Q L+  + TR +W+G    K        Q AK++W  ATYDSLLG+ + FP PIPL+EMV+FLV++WEQEGLYD
Subjt:  VDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWR-ATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD

AT1G15350.2 unknown protein3.5e-1652.63Show/hide
Query:  VDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWR-ATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD
        V+Q L+  + TR +W+G    K        Q AK++W  ATYDSLLG+ + FP PIPL+EMV+FLV++WEQEGLYD
Subjt:  VDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWR-ATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD

AT1G15350.3 unknown protein3.5e-1652.63Show/hide
Query:  VDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWR-ATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD
        V+Q L+  + TR +W+G    K        Q AK++W  ATYDSLLG+ + FP PIPL+EMV+FLV++WEQEGLYD
Subjt:  VDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWR-ATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD

AT5G20180.1 Ribosomal protein L367.2e-2263.53Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPT
        MKVR+SVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP      GLASL+ ++  PT
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPT

AT5G20180.2 Ribosomal protein L367.2e-2263.53Show/hide
Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPT
        MKVR+SVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP      GLASL+ ++  PT
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTTAAGCGTCGAGGCCGAGTATATATATACTGTTCATCCAATCCCAAACACAAGCAACGCCA
AGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAAATGAGGTGAAGCAAGAGGTTCTTCCCAGTCATAGCTCGGGAAGGGGGCTGGCTTCTC
TCATCCCCCAAAAGCAAGAGCCAACAATGTTGCCTGTTTTCTTGCCCCAAAGTCCACTCTATCTCTTTCCAATTACTGGGTTTTGGTTTTCCCTCAATCGATGCCCTTCT
CTGCGCTTTTGGCTGAACATCAACCATGGTGATGCTGAACAGTTCTTTCGCTGCGTGGATCAGCCGCTTATTCGCTTGCATGGGACTAGGCTGCAGTGGATTGGAAGTAG
TACTACTAAGGCAACGGAAGAAACTCAACAAAGACAGAAAGCAAAAATCAGTTGGCGTGCAACATATGACAGTTTACTGGGTACAAGACAGCCTTTTCCCCATCCAATTC
CTTTGTCTGAAATGGTGAACTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTTAAGCGTCGAGGCCGAGTATATATATACTGTTCATCCAATCCCAAACACAAGCAACGCCA
AGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAAATGAGGTGAAGCAAGAGGTTCTTCCCAGTCATAGCTCGGGAAGGGGGCTGGCTTCTC
TCATCCCCCAAAAGCAAGAGCCAACAATGTTGCCTGTTTTCTTGCCCCAAAGTCCACTCTATCTCTTTCCAATTACTGGGTTTTGGTTTTCCCTCAATCGATGCCCTTCT
CTGCGCTTTTGGCTGAACATCAACCATGGTGATGCTGAACAGTTCTTTCGCTGCGTGGATCAGCCGCTTATTCGCTTGCATGGGACTAGGCTGCAGTGGATTGGAAGTAG
TACTACTAAGGCAACGGAAGAAACTCAACAAAGACAGAAAGCAAAAATCAGTTGGCGTGCAACATATGACAGTTTACTGGGTACAAGACAGCCTTTTCCCCATCCAATTC
CTTTGTCTGAAATGGTGAACTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGATTGA
Protein sequenceShow/hide protein sequence
MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPVFLPQSPLYLFPITGFWFSLNRCPS
LRFWLNINHGDAEQFFRCVDQPLIRLHGTRLQWIGSSTTKATEETQQRQKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD