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HG10008130 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008130
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionZinc finger CCCH-type with G patch domain-containing protein
Genome locationChr10:20099135..20099547
RNA-Seq ExpressionHG10008130
SyntenyHG10008130
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000467 - G-patch domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050035.1 Zinc finger protein, putative isoform 1 [Cucumis melo var. makuwa]7.8e-2882.93Show/hide
Query:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RTGSGAL
Subjt:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_008443896.1 PREDICTED: uncharacterized protein LOC103487380 isoform X1 [Cucumis melo]6.6e-2781.71Show/hide
Query:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_008443898.1 PREDICTED: uncharacterized protein LOC103487380 isoform X2 [Cucumis melo]6.6e-2781.71Show/hide
Query:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_011655819.1 uncharacterized protein LOC101215133 [Cucumis sativus]9.6e-2677.91Show/hide
Query:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        M   +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ S  S++RTGS AL
Subjt:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_038876900.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120069254 [Benincasa hispida]3.6e-2576.74Show/hide
Query:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        M   +D+IGAFEL+TKGFGSKMMAKMG++EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ S  S +R+GSGAL
Subjt:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

TrEMBL top hitse value%identityAlignment
A0A0A0LTU7 Protein SQS14.6e-2677.91Show/hide
Query:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        M   +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ S  S++RTGS AL
Subjt:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A1S3B932 uncharacterized protein LOC103487380 isoform X13.2e-2781.71Show/hide
Query:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A1S3B9V9 Protein SQS13.2e-2781.71Show/hide
Query:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A5A7U8V1 Protein SQS13.8e-2882.93Show/hide
Query:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        +D+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RTGSGAL
Subjt:  KDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A6J1KSJ4 Protein SQS15.7e-2477.78Show/hide
Query:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRT
        M   +D+IGAFE HT GFGSKMMAKMGF+EG GLGKD QGM+C IEV+K PKSLGLGIEFSEASTS AGDNQES GS  RT
Subjt:  MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRT

SwissProt top hitse value%identityAlignment
A4UMC6 Tuftelin-interacting protein 116.7e-0639.06Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD
        + G++E HTKG G K++ KMG++ G+GLGK+ QG+   IE  +      +G   SE +T +  D
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD

A7SBN6 Zinc finger CCCH-type with G patch domain-containing protein2.1e-0754Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGL
        ++G +E HTKG GSK+MAKMG+I G+GLGKD +G    IEV+  P+   L
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGL

B3MPC0 Zinc finger CCCH-type with G patch domain-containing protein8.7e-0642.62Show/hide
Query:  DNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPK--SLGLGIEFSEAS
        + +GA+E +T+G GSK+M KMG+I G GLG D +G+   +     PK  SL   +E  EA+
Subjt:  DNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPK--SLGLGIEFSEAS

Q29RR5 Tuftelin-interacting protein 111.1e-0539.06Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD
        + G++E HTKG G K++ KMG++ G GLGK+ QG+   IE  +      +G   SE +T +  D
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD

Q9SHG6 Septin and tuftelin-interacting protein 1 homolog 11.8e-0648.28Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA
        +IG FE  TKG G K++ KMG+ +G GLGK+ QG+   IE    PK++G+G  +F EA
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA

Arabidopsis top hitse value%identityAlignment
AT1G17070.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain1.3e-0748.28Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA
        +IG FE  TKG G K++ KMG+ +G GLGK+ QG+   IE    PK++G+G  +F EA
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA

AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein7.6e-0545.1Show/hide
Query:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGM--SCLIEVMKWPKSLGLGIE
        +E HT+G  SKMMA MG+ EG GLG   QG+    L++V+   +SL   +E
Subjt:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGM--SCLIEVMKWPKSLGLGIE

AT2G42330.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain6.9e-0643.64Show/hide
Query:  EKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG
        EK +    FE  + G G K++ KMG+ +G GLGK+ QG+   IEV   PK++G+G
Subjt:  EKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG

AT2G42330.2 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain6.9e-0643.64Show/hide
Query:  EKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG
        EK +    FE  + G G K++ KMG+ +G GLGK+ QG+   IEV   PK++G+G
Subjt:  EKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG

AT3G09850.1 D111/G-patch domain-containing protein2.5e-1651.76Show/hide
Query:  TEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFS----EASTSAAGDNQESWGSTSRTG
        T    +IGAFE+HT+GFGSKMMAKMGFI+G GLGKD +G++  IE ++ PKSLGLG++FS    + S S+  +N      +S +G
Subjt:  TEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFS----EASTSAAGDNQESWGSTSRTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGAAAAAAAGGATAATATTGGTGCATTTGAGTTGCACACCAAGGGATTTGGGTCAAAGATGATGGCAAAAATGGGATTTATAGAAGGCGAAGGATTAGGGAAAGA
TGATCAAGGAATGTCTTGTCTCATTGAAGTGATGAAATGGCCAAAATCGCTTGGATTAGGCATCGAGTTCTCCGAGGCCTCGACTTCTGCTGCTGGTGACAACCAAGAAA
GTTGGGGATCCACCTCTAGAACTGGATCCGGAGCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGAAAAAAAGGATAATATTGGTGCATTTGAGTTGCACACCAAGGGATTTGGGTCAAAGATGATGGCAAAAATGGGATTTATAGAAGGCGAAGGATTAGGGAAAGA
TGATCAAGGAATGTCTTGTCTCATTGAAGTGATGAAATGGCCAAAATCGCTTGGATTAGGCATCGAGTTCTCCGAGGCCTCGACTTCTGCTGCTGGTGACAACCAAGAAA
GTTGGGGATCCACCTCTAGAACTGGATCCGGAGCTCTGTGA
Protein sequenceShow/hide protein sequence
MTEKKDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL