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HG10008160 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008160
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box protein
Genome locationChr10:20409941..20410426
RNA-Seq ExpressionHG10008160
SyntenyHG10008160
Gene Ontology termsNA
InterPro domainsIPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652959.1 hypothetical protein Csa_017750 [Cucumis sativus]2.4e-3052.55Show/hide
Query:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYH
        CNGLL +CK  L   +++C G+FNP TNEF+ VP+++ DIY +     GLG+IP+TKQYKLFR   +    +P++I+DVF FG    +NQWR L+SLPY 
Subjt:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYH

Query:  IKGCGVYMNGVIYWLVKEEH--GEPVIYALDVETEKL
        I+G G+YM+GVIY+LVK ++   +  IYALDVETE++
Subjt:  IKGCGVYMNGVIYWLVKEEH--GEPVIYALDVETEKL

KAE8652961.1 hypothetical protein Csa_017749 [Cucumis sativus]6.6e-2847.62Show/hide
Query:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRAT------------LLSNQPVSIMDVFTFGINPKQNQ
        CNGLL +CK  L   +++C G+FNP TNEF  VP+++ DIY +     GLG+IP+TK+YKLFRAT             +  +P++I+DVF FG    +N+
Subjt:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRAT------------LLSNQPVSIMDVFTFGINPKQNQ

Query:  WRHLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETEKL
        WR L+SLPY I   G+YM+GV+Y++  VK +  +  IYALDVETEK+
Subjt:  WRHLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETEKL

XP_031742179.1 F-box protein At3g07870-like [Cucumis sativus]2.4e-3052.55Show/hide
Query:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYH
        CNGLL +CK  L   +++C G+FNP TNEF+ VP+++ DIY +     GLG+IP+TKQYKLFR   +    +P++I+DVF FG    +NQWR L+SLPY 
Subjt:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYH

Query:  IKGCGVYMNGVIYWLVKEEH--GEPVIYALDVETEKL
        I+G G+YM+GVIY+LVK ++   +  IYALDVETE++
Subjt:  IKGCGVYMNGVIYWLVKEEH--GEPVIYALDVETEKL

XP_031742187.1 F-box protein At3g07870-like [Cucumis sativus]6.6e-2847.62Show/hide
Query:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRAT------------LLSNQPVSIMDVFTFGINPKQNQ
        CNGLL +CK  L   +++C G+FNP TNEF  VP+++ DIY +     GLG+IP+TK+YKLFRAT             +  +P++I+DVF FG    +N+
Subjt:  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRAT------------LLSNQPVSIMDVFTFGINPKQNQ

Query:  WRHLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETEKL
        WR L+SLPY I   G+YM+GV+Y++  VK +  +  IYALDVETEK+
Subjt:  WRHLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETEKL

XP_038879760.1 uncharacterized protein LOC120071509 [Benincasa hispida]3.0e-2855.17Show/hide
Query:  SCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLLSNQP--VSIMDVFTF---GINP----KQNQWR
        SCNGLLLI K     F   C G+FNPMTNEFF VP+   D   Y +   G GFIPTTK YKLFR T + ++P   S M+V TF   GINP     QNQWR
Subjt:  SCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLLSNQP--VSIMDVFTF---GINP----KQNQWR

Query:  HLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETEKL
        HLYS+P  I   G Y NG+IYWL   K+E  E VIY LDVE+EK+
Subjt:  HLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETEKL

TrEMBL top hitse value%identityAlignment
A0A0A0LSE0 F-box domain-containing protein4.6e-2752.03Show/hide
Query:  NSCNGLLLICKRNL--RNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLLSN------QPVSIMDVFTFG----INPKQ
        NSCNGLLLI K  L       +  G+FNPMTNEFF+VP  +++I  Y +   G GFIP TKQYKLFR     N        VS +DV TFG    I+PKQ
Subjt:  NSCNGLLLICKRNL--RNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLLSN------QPVSIMDVFTFG----INPKQ

Query:  NQWRHLYSLPYHIKGCGVYMNGVIYWLVK-EEHGEPVIYALDVETEKL
        +QWR LYSLP  ++  G ++NGVIYWL + +E  E V+Y LDVETEK+
Subjt:  NQWRHLYSLPYHIKGCGVYMNGVIYWLVK-EEHGEPVIYALDVETEKL

A0A0A0LYU1 Uncharacterized protein3.3e-2552.5Show/hide
Query:  ICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVK
        +C G+FNP TNEF+ VP+++ DIY +     GLG+IP+TKQYKLFR   +    +P++I+DVF FG    +NQWR L+SLPY I   G+YM+GVIY+LVK
Subjt:  ICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVK

Query:  EEH--GEPVIYALDVETEKL
         ++   +  IYALDVETE++
Subjt:  EEH--GEPVIYALDVETEKL

A0A1S3CB99 F-box protein At3g07870-like1.3e-2651.06Show/hide
Query:  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVS--IMDVFTFGINPKQNQWRHLYS
        NSCNGLL ICK     FDS+C G+ NPMTNEF E+PQ   ++  +   ++G GF P TKQYKLFR    +L N      IM++FTF    K  QWRH   
Subjt:  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVS--IMDVFTFGINPKQNQWRHLYS

Query:  LPYHIKGCGVYMNGVIYWLVK--EEHGEPVIYALDVETEKL
        LP+ +   G Y+NGVIYW+ K  E+ GE VIYALDV+TE++
Subjt:  LPYHIKGCGVYMNGVIYWLVK--EEHGEPVIYALDVETEKL

A0A5A7T7C6 F-box protein1.3e-2651.06Show/hide
Query:  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVS--IMDVFTFGINPKQNQWRHLYS
        NSCNGLL ICK     FDS+C G+ NPMTNEF E+PQ   ++  +   ++G GF P TKQYKLFR    +L N      IM++FTF    K  QWRH   
Subjt:  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVS--IMDVFTFGINPKQNQWRHLYS

Query:  LPYHIKGCGVYMNGVIYWLVK--EEHGEPVIYALDVETEKL
        LP+ +   G Y+NGVIYW+ K  E+ GE VIYALDV+TE++
Subjt:  LPYHIKGCGVYMNGVIYWLVK--EEHGEPVIYALDVETEKL

A0A5A7TE00 F-box protein1.6e-2448.98Show/hide
Query:  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVP--QMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLL------SNQPVSIMDVFTF----GINPKQ
        NSCNGL+ ICK     F + C G+FNPMTNEFF++P  ++  DIY+Y      LGF PTTKQYKLFR T        ++   SIMDV TF      N   
Subjt:  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVP--QMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLL------SNQPVSIMDVFTF----GINPKQ

Query:  NQWRHLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETE
        +QWR L+SLP  I   G Y+NGVIYW+   +++  E +IYA++VETE
Subjt:  NQWRHLYSLPYHIKGCGVYMNGVIYWL--VKEEHGEPVIYALDVETE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGGAATTGGAAGGAAATAAATCCGCTTCTTCATTACGCTTTGACGGGGACTGGTCCAGGATCACACTTCAATTCCTGCAATGGCCTTCTGCTTATTTGT
AAAAGAAATTTAAGAAATTTTGACAGCATTTGTGGTGGCGTATTCAATCCGATGACTAATGAGTTTTTCGAAGTTCCTCAAATGTATGAAGATATTTACGCTTAC
GCCTTTGGTGCAGTTGGATTAGGTTTCATTCCTACGACGAAGCAATATAAATTGTTTAGAGCTACCCTTCTTTCAAATCAACCTGTTTCCATAATGGATGTTTTC
ACATTTGGAATCAACCCTAAACAAAACCAATGGAGGCATCTTTACTCTCTACCTTACCACATCAAAGGTTGTGGTGTTTATATGAATGGAGTCATCTATTGGTTG
GTAAAAGAAGAACATGGTGAGCCTGTCATATATGCTCTTGATGTTGAAACTGAAAAATTGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGGAATTGGAAGGAAATAAATCCGCTTCTTCATTACGCTTTGACGGGGACTGGTCCAGGATCACACTTCAATTCCTGCAATGGCCTTCTGCTTATTTGT
AAAAGAAATTTAAGAAATTTTGACAGCATTTGTGGTGGCGTATTCAATCCGATGACTAATGAGTTTTTCGAAGTTCCTCAAATGTATGAAGATATTTACGCTTAC
GCCTTTGGTGCAGTTGGATTAGGTTTCATTCCTACGACGAAGCAATATAAATTGTTTAGAGCTACCCTTCTTTCAAATCAACCTGTTTCCATAATGGATGTTTTC
ACATTTGGAATCAACCCTAAACAAAACCAATGGAGGCATCTTTACTCTCTACCTTACCACATCAAAGGTTGTGGTGTTTATATGAATGGAGTCATCTATTGGTTG
GTAAAAGAAGAACATGGTGAGCCTGTCATATATGCTCTTGATGTTGAAACTGAAAAATTGAATTAA
Protein sequenceShow/hide protein sequence
MVRNWKEINPLLHYALTGTGPGSHFNSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLLSNQPVSIMDVF
TFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVKEEHGEPVIYALDVETEKLN