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HG10008193 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008193
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationChr10:20649535..20649798
RNA-Seq ExpressionHG10008193
SyntenyHG10008193
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]3.2e-2989.02Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        MA+VDSSFIFIGFS VP+PL NNNNGRKF ITSAKRTQ+SDSDS SSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]3.3e-2685.88Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        MA+VDSSFIFIG SAVP+PL N   NNNGRKF ITSAKRTQ  DSDSTSSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

XP_023004836.1 uncharacterized protein LOC111498016 [Cucurbita maxima]3.9e-1975.9Show/hide
Query:  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        M I DSSFIF G SA+P+PL  +NNN RKF  TSAKRT   DSDS SST   QLKFPSLRVSNPLLARSVV+VLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]4.7e-2074.7Show/hide
Query:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        M I DS+FIF G SA+P+P L +NNN RKF  TSAKRT +SDSDS SST   QLKFPSLRV+NPLLARSVV+VLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]1.1e-2482.93Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        MA+V+SSFIFIG S VPYPLSNNN+ RKFRITSAK T++SDSDS SS    QLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein1.6e-2989.02Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        MA+VDSSFIFIGFS VP+PL NNNNGRKF ITSAKRTQ+SDSDS SSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

A0A1S3B903 uncharacterized protein LOC1034873291.6e-2685.88Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        MA+VDSSFIFIG SAVP+PL N   NNNGRKF ITSAKRTQ  DSDSTSSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

A0A6J1C0R6 uncharacterized protein LOC1110073012.4e-1465Show/hide
Query:  IVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        + DS+FIF G SAV   L N NN R FR   AKRT   DS +T S Q NQ +FPSLRV NPL+AR VVSVLGLGFVDAGY
Subjt:  IVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

A0A6J1EZT4 uncharacterized protein LOC1114408614.2e-1974.7Show/hide
Query:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        M I DSSFIF G SA+P+P L +NNN RKF  TSAKRT   DSDS SST   QLKFPSLRV+NPLLARSVV+VLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

A0A6J1KT82 uncharacterized protein LOC1114980161.9e-1975.9Show/hide
Query:  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY
        M I DSSFIF G SA+P+PL  +NNN RKF  TSAKRT   DSDS SST   QLKFPSLRVSNPLLARSVV+VLGLGFVDAGY
Subjt:  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACCTTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTAC
ACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCG
GATTAGGGTTCGTCGATGCAGGGTATGAAAAATTTTACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACCTTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTAC
ACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCG
GATTAGGGTTCGTCGATGCAGGGTATGAAAAATTTTACCTCTAA
Protein sequenceShow/hide protein sequence
MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYEKFYL