CuGenDBv2

Gene ID	HG10008282
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Genome location	Chr10:21540104..21541273
RNA-Seq Expression	HG10008282
Synteny	HG10008282
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0008380 - RNA splicing (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589703.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-47

86.99

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE
        MVDRERDRDRGRDRDKD DRDRY DRERDRD+RERDRRRDREDRDRDRERRR+++DRD ERERGRGKRSHTP+R RSRHTRSRTRSPDRHRSRSLSRTPE
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE

Query:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        DRS RRRHRSPSPDH RKRHR+DLT DDEK+RQKAVSDF+ +GI++
Subjt:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

XP_004146322.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus]

1.2e-45

86.75

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDRRRDRED     RDRDRERRRDQ+DRDRERERGR KRS TPDR RSR  RSRTRSPDRHRSRSL
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL

Query:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        SRTPEDR SRRRHRSPSPDHARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

XP_008453595.1 PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo]

1.1e-46

87.42

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDRRRDRED     RDRDRERRRD +DRDRERERGR KRSHTPDR RSR  RSRTRSPDRHRSRSL
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL

Query:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        SRTPEDRSSRRRHRSPSPDHARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

XP_022135124.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia]

6.8e-44

82.19

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRE           RDRERRRD++DRDRERERGR KRSHTPDR RSRHTRSRTRSPDRHRSRSLSRTPE
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE

Query:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        DRS RRRHR+PSP+HARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

XP_023530476.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo]

1.8e-44

84.25

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDR     DRDR+RERRRD+EDRDRERERGR KRSHTPDR RSRHTRSRTRSPDRHR+RSLSR+PE
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE

Query:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        DRS RRRHRSPSP+HARKRHR+DLT DD+KERQK VSDF+ +GI++
Subjt:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LU61 SNRNP27 domain-containing protein

6.0e-46

86.75

Show/hide

Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDRRRDRED     RDRDRERRRDQ+DRDRERERGR KRS TPDR RSR  RSRTRSPDRHRSRSL
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL

Query:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        SRTPEDR SRRRHRSPSPDHARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

A0A1S3BW27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

5.4e-47

87.42

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDRRRDRED     RDRDRERRRD +DRDRERERGR KRSHTPDR RSR  RSRTRSPDRHRSRSL
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL

Query:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        SRTPEDRSSRRRHRSPSPDHARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

A0A5D3CK71 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

5.4e-47

87.42

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDRRRDRED     RDRDRERRRD +DRDRERERGR KRSHTPDR RSR  RSRTRSPDRHRSRSL
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDRED-----RDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSL

Query:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        SRTPEDRSSRRRHRSPSPDHARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  SRTPEDRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

A0A6J1C0K3 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

3.3e-44

82.19

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRE           RDRERRRD++DRDRERERGR KRSHTPDR RSRHTRSRTRSPDRHRSRSLSRTPE
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE

Query:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        DRS RRRHR+PSP+HARKRHR+DLT DDEKERQKAVSDF+ +GI++
Subjt:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

A0A6J1L1Y6 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like

5.6e-44

82.88

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Query:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE
        MVDRERDRDRGRDRDKD DRDRYKDRERDRDHRERDR     DRDR+RERRRD++DRDRERERGR KRSHTPDR RSRHTRSRTRSPD+HR+RSLSR+PE
Subjt:  MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPE

Query:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE
        DRS RRRHRSPSP+HARKRHR+DLT DD+KERQK VSDF+ +GI++
Subjt:  DRSSRRRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISE

SwissProt top hits

e value

%identity

Alignment

Q551H4 Serine/threonine-protein kinase fray2

9.3e-04

51.91

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Query:  DRERDRD---RGRDRDKDWDRDRYKDRERDRDH---RERDRRRDRE-----DRDRDRERRRDQ-EDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRH
        DRER+RD   R RDRD++ +R+R +DRERDRD    R RDR RDRE     DR RDR+R RD+  DR RER+R R  R  + DR RSR + SR RS DR 
Subjt:  DRERDRD---RGRDRDKDWDRDRYKDRERDRDH---RERDRRRDRE-----DRDRDRERRRDQ-EDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRH

Query:  RSRSLSRTPEDRSSRRRHRSPSPDHARKRHR
        RS S  R    R SR + R  S D  R R R
Subjt:  RSRSLSRTPEDRSSRRRHRSPSPDHARKRHR

Arabidopsis top hits

e value

%identity

Alignment

AT5G57370.1 unknown protein

2.5e-04

Show/hide

Query:  DRDRYKDRERDRDHR-ERDRRRDREDRDRDRERRRDQEDRDRERERG---RGKRSHTPDRDRSRHTRSR-TRSPDRHRSRSLS---RTPEDRSSRRRHRS
        +RDR ++RERD+D   +RDRRR R+DRDRDR+R R++ DR+R+R+RG   +  RS TPD     H R+R  RSP+R+RSRS S       DR    R RS
Subjt:  DRDRYKDRERDRDHR-ERDRRRDREDRDRDRERRRDQEDRDRERERG---RGKRSHTPDRDRSRHTRSR-TRSPDRHRSRSLS---RTPEDRSSRRRHRS

Query:  PSPD-HARKRHRQDLTGDDEKERQK
        PSPD  +RKR RQ  + DDEKER +
Subjt:  PSPD-HARKRHRQDLTGDDEKERQK

Sequences

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CDS sequence

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ATGGTCGACCGTGAACGAGATAGAGATAGAGGCCGCGACAGAGATAAAGATTGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCACCGTGAACGT
GACCGGCGTAGGGATCGAGAAGATCGTGACCGGGACCGTGAACGGCGTAGGGATCAGGAAGACCGTGACCGTGAAAGGGAGCGTGGTCGGGGTAAAAGGTCACAC
ACTCCTGACCGCGACAGATCCCGCCATACACGCTCTCGCACTCGCTCGCCGGACCGGCACCGTTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGTCCTCTCGC
CGCCGCCATCGTTCGCCCTCCCCGGATCATGCTCGGAAGCGTCATCGACAGGATTTGACTGGGGACGATGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTCATG
TTCAATGGGATATCTGAATATATCGTCATCCTTGAGGCTCTGACTAAAGTACTTGACATCTATACTCCTGAGAATGCTCCTTAG

mRNA sequence

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Protein sequence

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MVDRERDRDRGRDRDKDWDRDRYKDRERDRDHRERDRRRDREDRDRDRERRRDQEDRDRERERGRGKRSHTPDRDRSRHTRSRTRSPDRHRSRSLSRTPEDRSSR
RRHRSPSPDHARKRHRQDLTGDDEKERQKAVSDFMFNGISEYIVILEALTKVLDIYTPENAP

HG10008282 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome