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HG10008292 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008292
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box protein
Genome locationChr10:21657239..21657760
RNA-Seq ExpressionHG10008292
SyntenyHG10008292
Gene Ontology termsNA
InterPro domainsIPR013187 - F-box associated domain, type 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039747.1 F-box protein [Cucumis melo var. makuwa]2.5e-1736.42Show/hide
Query:  GVYLNGILYWIGV--DLTNKYVVCCLDVETEKLET--IISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPH--WIEVWRLQNFGGKDSCTIEFVISNMSYW
        G YLNG++YWIG   D  N+Y++  ++VETE +E   I+ L     S   +++ FN  VYA F +    +   I+VWR+Q    KD    EFVI ++   
Subjt:  GVYLNGILYWIGV--DLTNKYVVCCLDVETEKLET--IISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPH--WIEVWRLQNFGGKDSCTIEFVISNMSYW

Query:  LSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
         S     S  LIK++ED EI+C++N   F  YN  +GR K + + ++  +    C ++  +FG LQ IL+GE+
Subjt:  LSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

KAE8652429.1 hypothetical protein Csa_013434 [Cucumis sativus]7.8e-1937.5Show/hide
Query:  GVYLNGILYWIGVDL-TNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERL
        G ++NG++YW+G     N+YVV  LDVETEK++ + ++ EV    WM+IQ FNG VYAVF + +A    +VWR+Q    K+S   +FVI +         
Subjt:  GVYLNGILYWIGVDL-TNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERL

Query:  MPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
          +  L+K+YE+ E++C+V    F  YNP +G  K +        F   C ++  +FGSL  IL+G++
Subjt:  MPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

TYK24751.1 F-box protein [Cucumis melo var. makuwa]2.1e-1636.11Show/hide
Query:  IQCGGVYLNGILYWIGVD--LTNKYVVCCLDVETEKLE--TIISLSEVGYSK--WMNIQIFNGDVYAVFCL--YDAPHWIEVWRLQNFGGKDSCTIEFVI
        I C GVYLNG +YW+G      N+Y +  L+VETE++E   ++ L     S    ++++ FNG VYA F +        I+VWR+Q    KD    EFVI
Subjt:  IQCGGVYLNGILYWIGVD--LTNKYVVCCLDVETEKLE--TIISLSEVGYSK--WMNIQIFNGDVYAVFCL--YDAPHWIEVWRLQNFGGKDSCTIEFVI

Query:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
         ++ + W       S  LIK++ED EI+C+VN   F  YN  +GR K + + ++  ++   C ++  +FG L  IL+GE+
Subjt:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

XP_011660339.1 putative F-box protein At1g32420 [Cucumis sativus]7.8e-1937.5Show/hide
Query:  GVYLNGILYWIGVDL-TNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERL
        G ++NG++YW+G     N+YVV  LDVETEK++ + ++ EV    WM+IQ FNG VYAVF + +A    +VWR+Q    K+S   +FVI +         
Subjt:  GVYLNGILYWIGVDL-TNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERL

Query:  MPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
          +  L+K+YE+ E++C+V    F  YNP +G  K +        F   C ++  +FGSL  IL+G++
Subjt:  MPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

XP_038890298.1 F-box protein At3g07870-like [Benincasa hispida]2.3e-1837.99Show/hide
Query:  MNIQCGGVYLNGILYWIG--VDLTNKYVVCCLDVETEKLETIISLS---EVGYSKWMNIQIFNGDVYAVFCL-YDAPHWIEVWRLQNFGGKDSCTIEFVI
        ++I   G YLNG +YWIG   +  N+Y +  LDVETEK+E  I L     +  SK   +Q FN  VYA+F +     + I+VWR+Q    KD    EFV+
Subjt:  MNIQCGGVYLNGILYWIG--VDLTNKYVVCCLDVETEKLETIISLS---EVGYSKWMNIQIFNGDVYAVFCL-YDAPHWIEVWRLQNFGGKDSCTIEFVI

Query:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGE
         ++ + W          LIK++ED EI+C+VN   F  YNP +GR K + + E+  ++   C + S +FG L  IL+G+
Subjt:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGE

TrEMBL top hitse value%identityAlignment
A0A0A0LSE0 F-box domain-containing protein3.8e-1937.5Show/hide
Query:  GVYLNGILYWIGVDL-TNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERL
        G ++NG++YW+G     N+YVV  LDVETEK++ + ++ EV    WM+IQ FNG VYAVF + +A    +VWR+Q    K+S   +FVI +         
Subjt:  GVYLNGILYWIGVDL-TNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERL

Query:  MPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
          +  L+K+YE+ E++C+V    F  YNP +G  K +        F   C ++  +FGSL  IL+G++
Subjt:  MPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

A0A0A0LWG1 F-box domain-containing protein7.6e-2037.7Show/hide
Query:  IQCGGVYLNGILYWI----GVDLTNKYVVCCLDVETEKLE--TIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHW------IEVWRLQNFGGKDSCTI
        I   GVYLNGI+YW+    G D   KYV+  LDVETE +E   ++ +   GY K   I  FNG +YA F +    +W      I+VWR+Q    KDS   
Subjt:  IQCGGVYLNGILYWI----GVDLTNKYVVCCLDVETEKLE--TIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHW------IEVWRLQNFGGKDSCTI

Query:  EFVISNMSYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
        +FVI ++S     R     +LIK +EDEEI+ ++N   F  YNP S + + + + ++  ++   C ++S +FG L +IL G Q
Subjt:  EFVISNMSYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

A0A5A7TCF3 F-box protein1.0e-1636.11Show/hide
Query:  IQCGGVYLNGILYWIGVD--LTNKYVVCCLDVETEKLE--TIISLSEVGYSK--WMNIQIFNGDVYAVFCL--YDAPHWIEVWRLQNFGGKDSCTIEFVI
        I C GVYLNG +YW+G      N+Y +  L+VETE++E   ++ L     S    ++++ FNG VYA F +        I+VWR+Q    KD    EFVI
Subjt:  IQCGGVYLNGILYWIGVD--LTNKYVVCCLDVETEKLE--TIISLSEVGYSK--WMNIQIFNGDVYAVFCL--YDAPHWIEVWRLQNFGGKDSCTIEFVI

Query:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
         ++ + W       S  LIK++ED EI+C+VN   F  YN  +GR K + + ++  ++   C ++  +FG L  IL+GE+
Subjt:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

A0A5A7TE00 F-box protein1.2e-1736.42Show/hide
Query:  GVYLNGILYWIGV--DLTNKYVVCCLDVETEKLET--IISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPH--WIEVWRLQNFGGKDSCTIEFVISNMSYW
        G YLNG++YWIG   D  N+Y++  ++VETE +E   I+ L     S   +++ FN  VYA F +    +   I+VWR+Q    KD    EFVI ++   
Subjt:  GVYLNGILYWIGV--DLTNKYVVCCLDVETEKLET--IISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPH--WIEVWRLQNFGGKDSCTIEFVISNMSYW

Query:  LSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
         S     S  LIK++ED EI+C++N   F  YN  +GR K + + ++  +    C ++  +FG LQ IL+GE+
Subjt:  LSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

A0A5D3DMB7 F-box protein1.0e-1636.11Show/hide
Query:  IQCGGVYLNGILYWIGVD--LTNKYVVCCLDVETEKLE--TIISLSEVGYSK--WMNIQIFNGDVYAVFCL--YDAPHWIEVWRLQNFGGKDSCTIEFVI
        I C GVYLNG +YW+G      N+Y +  L+VETE++E   ++ L     S    ++++ FNG VYA F +        I+VWR+Q    KD    EFVI
Subjt:  IQCGGVYLNGILYWIGVD--LTNKYVVCCLDVETEKLE--TIISLSEVGYSK--WMNIQIFNGDVYAVFCL--YDAPHWIEVWRLQNFGGKDSCTIEFVI

Query:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ
         ++ + W       S  LIK++ED EI+C+VN   F  YN  +GR K + + ++  ++   C ++  +FG L  IL+GE+
Subjt:  SNM-SYWLSERLMPSFELIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G51290.1 F-box and associated interaction domains-containing protein1.2e-0428.75Show/hide
Query:  IQCGGVYLNGILYWIGVDLTNKYVVCCLDVETEKLETIISLS-EVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQN
        +Q   V LNG LYW GVD+ N   +      TE+L T   L  +      + + +F  D +++  L +    I++W  +N
Subjt:  IQCGGVYLNGILYWIGVDLTNKYVVCCLDVETEKLETIISLS-EVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATTCAATGTGGTGGTGTTTACTTGAATGGAATTCTGTATTGGATTGGTGTAGATCTAACAAATAAGTACGTCGTATGTTGTTTGGATGTTGAAACTGAAAAACT
TGAAACAATTATTTCTCTATCGGAAGTTGGTTATTCTAAATGGATGAACATTCAGATCTTTAATGGCGATGTTTATGCAGTTTTTTGCTTATACGATGCACCTCATTGGA
TTGAAGTATGGAGGTTGCAAAATTTTGGAGGTAAAGATTCATGTACAATAGAATTTGTTATTAGTAACATGTCATATTGGTTGTCCGAACGATTGATGCCTTCTTTTGAA
CTCATCAAAAGCTATGAAGATGAAGAGATAGTGTGTCTTGTCAATCGTTTATGTTTTATTTCGTACAATCCAAAGTCTGGAAGGATCAAGAAGATGAAACAATTTGAACG
AAGCTCCCAGTTCTTTAGTTTTTGTAGTGTAGATTCCTTCCATTTTGGTTCGCTCCAAAGGATACTAAGTGGAGAACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACATTCAATGTGGTGGTGTTTACTTGAATGGAATTCTGTATTGGATTGGTGTAGATCTAACAAATAAGTACGTCGTATGTTGTTTGGATGTTGAAACTGAAAAACT
TGAAACAATTATTTCTCTATCGGAAGTTGGTTATTCTAAATGGATGAACATTCAGATCTTTAATGGCGATGTTTATGCAGTTTTTTGCTTATACGATGCACCTCATTGGA
TTGAAGTATGGAGGTTGCAAAATTTTGGAGGTAAAGATTCATGTACAATAGAATTTGTTATTAGTAACATGTCATATTGGTTGTCCGAACGATTGATGCCTTCTTTTGAA
CTCATCAAAAGCTATGAAGATGAAGAGATAGTGTGTCTTGTCAATCGTTTATGTTTTATTTCGTACAATCCAAAGTCTGGAAGGATCAAGAAGATGAAACAATTTGAACG
AAGCTCCCAGTTCTTTAGTTTTTGTAGTGTAGATTCCTTCCATTTTGGTTCGCTCCAAAGGATACTAAGTGGAGAACAGTAG
Protein sequenceShow/hide protein sequence
MNIQCGGVYLNGILYWIGVDLTNKYVVCCLDVETEKLETIISLSEVGYSKWMNIQIFNGDVYAVFCLYDAPHWIEVWRLQNFGGKDSCTIEFVISNMSYWLSERLMPSFE
LIKSYEDEEIVCLVNRLCFISYNPKSGRIKKMKQFERSSQFFSFCSVDSFHFGSLQRILSGEQ