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HG10008461 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008461
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPeriodic tryptophan protein 1-like protein
Genome locationChr10:23344928..23349741
RNA-Seq ExpressionHG10008461
SyntenyHG10008461
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021602.1 hypothetical protein SDJN02_15328 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-0877.5Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED
        MISAVSWVPKG CKPLPV  DPP+KE+IDE LK K+VLE+
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED

XP_022134698.1 uncharacterized WD repeat-containing protein C17D11.16 [Momordica charantia]1.7e-0873.17Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS
        MIS +SWVPKG CKPLPV+ DPP+KE+IDE LK K+VLE+S
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS

XP_022933466.1 uncharacterized WD repeat-containing protein C17D11.16 [Cucurbita moschata]2.2e-0877.5Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED
        MISAVSWVPKG CKPLPV  DPP+KE+IDE LK K+VLE+
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED

XP_023007202.1 uncharacterized WD repeat-containing protein C17D11.16 [Cucurbita maxima]2.2e-0877.5Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED
        MISAVSWVPKG CKPLPV  DPP+KE+IDE LK K+VLE+
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED

XP_038890811.1 uncharacterized WD repeat-containing protein C17D11.16-like [Benincasa hispida]2.2e-0875.61Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS
        MISAVSWVPKG CKPLP L DPP+KE+IDE LK K+V++DS
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS

TrEMBL top hitse value%identityAlignment
A0A0A0LH54 WD_REPEATS_REGION domain-containing protein1.5e-0770.73Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS
        MISAVSWVPKG CKPLP L DPP++E+ID+ LK   V+EDS
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS

A0A1S3BUS3 periodic tryptophan protein 1 homolog3.4e-0770.73Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS
        MISAVSWVPKG CKP+P L DPP++E IDE LK   V+EDS
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS

A0A6J1C2R2 uncharacterized WD repeat-containing protein C17D11.168.2e-0973.17Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS
        MIS +SWVPKG CKPLPV+ DPP+KE+IDE LK K+VLE+S
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDS

A0A6J1EZ45 uncharacterized WD repeat-containing protein C17D11.161.1e-0877.5Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED
        MISAVSWVPKG CKPLPV  DPP+KE+IDE LK K+VLE+
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED

A0A6J1KY07 uncharacterized WD repeat-containing protein C17D11.161.1e-0877.5Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED
        MISAVSWVPKG CKPLPV  DPP+KE+IDE LK K+VLE+
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18905.1 Transducin/WD40 repeat-like superfamily protein2.1e-0443.48Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLK---FKNVLEDSRE
        MI+AVSW+PKG  K +P + +PP+KE + E ++   F   +E S E
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLK---FKNVLEDSRE

AT4G18905.2 Transducin/WD40 repeat-like superfamily protein2.1e-0443.48Show/hide
Query:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLK---FKNVLEDSRE
        MI+AVSW+PKG  K +P + +PP+KE + E ++   F   +E S E
Subjt:  MISAVSWVPKGACKPLPVLEDPPTKESIDEFLK---FKNVLEDSRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCAGCGGTTTCGTGGGTTCCTAAAGGGGCTTGTAAGCCTCTTCCAGTCCTGGAAGATCCTCCCACCAAGGAGTCTATTGATGAATTCCTCAAGTTCAAGAATGT
CTTGGAGGATTCCAGGGAGCTGTGTTTTCGATTTCCTTCTCAGAAGATTGTCCCTTTTTGCTGTCTAGGCTCCAAGGGCAAATTGGAGGTGTGGGATACATTATCTGATG
CTGCAGTCTCTCGGAAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATCAGCGGTTTCGTGGGTTCCTAAAGGGGCTTGTAAGCCTCTTCCAGTCCTGGAAGATCCTCCCACCAAGGAGTCTATTGATGAATTCCTCAAGTTCAAGAATGT
CTTGGAGGATTCCAGGGAGCTGTGTTTTCGATTTCCTTCTCAGAAGATTGTCCCTTTTTGCTGTCTAGGCTCCAAGGGCAAATTGGAGGTGTGGGATACATTATCTGATG
CTGCAGTCTCTCGGAAGTTCTGA
Protein sequenceShow/hide protein sequence
MISAVSWVPKGACKPLPVLEDPPTKESIDEFLKFKNVLEDSRELCFRFPSQKIVPFCCLGSKGKLEVWDTLSDAAVSRKF