; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008568 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008568
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHNH domain-containing protein
Genome locationChr10:24236714..24241424
RNA-Seq ExpressionHG10008568
SyntenyHG10008568
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR002711 - HNH endonuclease
IPR003615 - HNH nuclease


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453223.1 PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]5.4e-9794.57Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_008453224.1 PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]9.8e-9996.67Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_022933741.1 uncharacterized protein LOC111441065 [Cucurbita moschata]4.0e-10093.12Show/hide
Query:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

XP_023531696.1 uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo]3.0e-10093.12Show/hide
Query:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

XP_038878253.1 uncharacterized protein LOC120070538 [Benincasa hispida]5.2e-10096.11Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGGHRHSGSGSGDERPRFFD KAKAICW KADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS++NDVDTSELKGYSCD+KFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

TrEMBL top hitse value%identityAlignment
A0A0A0LUK3 HNHc domain-containing protein1.9e-10095.14Show/hide
Query:  LAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTA
        L GVPTPME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTA
Subjt:  LAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTA

Query:  DNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED
        DNCQILQTRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Subjt:  DNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED

A0A1S3BVP6 uncharacterized protein LOC103494011 isoform X24.7e-9996.67Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A5A7UWI1 HNH endonuclease4.7e-9996.67Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A6J1EZW3 uncharacterized protein LOC1114410651.9e-10093.12Show/hide
Query:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

A0A6J1I7G1 uncharacterized protein LOC1114715091.9e-10093.12Show/hide
Query:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18680.1 HNH endonuclease domain-containing protein1.6e-7068.18Show/hide
Query:  TPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQI
        T   T ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHPERWRKD AGN+VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQI
Subjt:  TPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQI

Query:  LQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        LQTRVNRFKS + +VD + LK YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Subjt:  LQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

AT3G47490.1 HNH endonuclease1.5e-3340.41Show/hide
Query:  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGSGSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA
        MK DP         +  P+      SS SP R+ G  R                    GSG GD    PR F    K  CW KA+ + GR PERWR+D  
Subjt:  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGSGSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA

Query:  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
        GN+V ++   C GCLC +YDHIVPYSKGG+ST +NCQ+LQ +VNR K +K D+  SEL   S   +   +++D+IE+  YG+V R      CR
Subjt:  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR

AT3G47490.2 HNH endonuclease2.2e-1639.37Show/hide
Query:  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGSGSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA
        MK DP         +  P+      SS SP R+ G  R                    GSG GD    PR F    K  CW KA+ + GR PERWR+D  
Subjt:  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGSGSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA

Query:  GNVVCKRFCNCQGCLCFEYDHIVPYSK
        GN+V ++   C GCLC +YDHIVPYSK
Subjt:  GNVVCKRFCNCQGCLCFEYDHIVPYSK

AT3G47490.3 HNH endonuclease6.0e-3036.62Show/hide
Query:  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGSGSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA
        MK DP         +  P+      SS SP R+ G  R                    GSG GD    PR F    K  CW KA+ + GR PERWR+D  
Subjt:  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGSGSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA

Query:  GNVVCKRFCNCQGCLCFEYDHIVPYS--------------------KGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVY
        GN+V ++   C GCLC +YDHIVPYS                    KGG+ST +NCQ+LQ +VNR K +K D+  SEL   S   +   +++D+IE+  Y
Subjt:  GNVVCKRFCNCQGCLCFEYDHIVPYS--------------------KGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVY

Query:  GDVIRPGNQCRCR
        G+V R      CR
Subjt:  GDVIRPGNQCRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCTCGTCGGAGGTTCGCCGTTCGTGGTCTGTGATCGCCGGAGAACGAGACTGAGCAAGGGGGCGGCGGCAACGAGGGGAAAGATGAAGTCCGATCCGCTGGCCGG
CGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCG
ACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGC
AACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATT
CAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATG
TAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCT
TTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCTCGTCGGAGGTTCGCCGTTCGTGGTCTGTGATCGCCGGAGAACGAGACTGAGCAAGGGGGCGGCGGCAACGAGGGGAAAGATGAAGTCCGATCCGCTGGCCGG
CGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCG
ACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGC
AACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATT
CAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATG
TAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCT
TTGTAA
Protein sequenceShow/hide protein sequence
MLLVGGSPFVVCDRRRTRLSKGAAATRGKMKSDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFC
NCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
L