; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008603 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008603
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiontranscription factor ILI6-like
Genome locationChr10:24502954..24503362
RNA-Seq ExpressionHG10008603
SyntenyHG10008603
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]1.6e-3496.74Show/hide
Query:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIR  QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]9.1e-3595.6Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIR  QSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022987208.1 transcription factor PRE3-like [Cucurbita maxima]7.0e-3593.41Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIR +QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_023516930.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]2.0e-3492.31Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIR +QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]1.3e-3698.9Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIR TQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A067GBS6 BHLH domain-containing protein2.9e-3492.31Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPE+R  +SDKVSA KVLQETCNYIR+LHREVDDLSERLSELLAT+DTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A1S3BWE2 transcription factor PRE3-like7.5e-3596.74Show/hide
Query:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIR  QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like4.4e-3595.6Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIR  QSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1E6W2 transcription factor PRE3-like9.9e-3592.31Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIR +QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1JIT1 transcription factor PRE3-like3.4e-3593.41Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIR +QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI65.4e-3080.43Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R   +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

F4JCN9 Transcription factor PRE48.1e-2670.65Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPE+    +S KVSA++VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Q0DUR2 Transcription factor ILI65.4e-3080.43Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R   +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

Q8GW32 Transcription factor PRE67.0e-3081.52Show/hide
Query:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R  +SDKVSA+KVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE36.4e-3181.72Show/hide
Query:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRPT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R + +SDKVSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRPT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.0e-3181.52Show/hide
Query:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R  +SDKVSA+KVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.5e-3281.72Show/hide
Query:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRPT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R + +SDKVSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRPT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein5.0e-2367.74Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRP-TQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM
        MS+RRSR + S +SRI+DDQ+ DLVSKL+Q LPEI    +SDKVSA+KVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRP-TQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM

AT3G47710.1 BANQUO 35.7e-2770.65Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPE+    +S KVSA++VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein4.2e-2265.59Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM
        MS+RRSR + S + RI+D+Q+ DLVSKL+Q+LPEI +  +SDK SA+KVLQETCNYIRNL+REVD+LSERLS+LL +   D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGTTCAAGAATCACTGATGACCAAATTAATGATCTTGTTTCCAAGTTGCAACAACTTCTTCCTGAGATTCGCCC
CACGCAATCTGATAAGGTTTCAGCAGCAAAAGTGTTGCAGGAGACATGCAACTACATAAGAAACTTGCATAGAGAAGTGGATGATTTAAGTGAGAGACTTTCAGAGTTGT
TGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGTTCAAGAATCACTGATGACCAAATTAATGATCTTGTTTCCAAGTTGCAACAACTTCTTCCTGAGATTCGCCC
CACGCAATCTGATAAGGTTTCAGCAGCAAAAGTGTTGCAGGAGACATGCAACTACATAAGAAACTTGCATAGAGAAGTGGATGATTTAAGTGAGAGACTTTCAGAGTTGT
TGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAG
Protein sequenceShow/hide protein sequence
MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ