CuGenDBv2

Gene ID	HG10008770
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	Chr10:25936685..25943102
RNA-Seq Expression	HG10008770
Synteny	HG10008770
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

1.5e-87

79.5

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASP+GPSSHS NGVVNGDASSESTSHHTD+S  G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKAYES TSGHASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

3.3e-87

79.5

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKAYES TS HASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

8.7e-80

73.22

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        ME+KPT++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTT STAT+A   L+IASPNGPS HSTNGVVNGDASSEST+HH DTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ                                          AKAYES TSGHASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

2.5e-87

78.66

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATT TSGLTIASPN PSSHSTNGVVNGDASSEST+HHTDTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKA+ES TSGHASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

2.0e-84

78.24

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT ST TTATSGL IASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         A AYES TSG  SPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLS+LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

7.2e-88

79.5

Show/hide

Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASP+GPSSHS NGVVNGDASSESTSHHTD+S  G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKAYES TSGHASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

1.6e-87

79.5

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKAYES TS HASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

1.6e-87

79.5

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKAYES TS HASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

1.2e-87

78.66

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATT TSGLTIASPN PSSHSTNGVVNGDASSEST+HHTDTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKA+ES TSGHASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

1.2e-87

78.66

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATT TSGLTIASPN PSSHSTNGVVNGDASSEST+HHTDTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                         AKA+ES TSGHASPADQSEIDKLEQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQ

Query:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        HLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  HLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

2.2e-38

46.75

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Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST  TPS+A T T        NG      + +V+ DA++ + TSHH++++  GG G  G   L
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL

Query:  EEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQHLSNLRKE
        +EA +RYKNSV +LRA+LAAIPNSQK                                         AKA E   +G  SP  + EI+KLE+   +LR E
Subjt:  EEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQHLSNLRKE

Query:  LVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  LVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

1.6e-39

46.75

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST  TPS+A T T        NG      + +V+ DA++ + TSHH++++  GG G  G   L
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL

Query:  EEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQHLSNLRKE
        +EA +RYKNSV +LRA+LAAIPNSQK                                         AKA E   +G  SP  + EI+KLE+   +LR E
Subjt:  EEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQHLSNLRKE

Query:  LVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  LVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAACGGATCATATTCCTCAAATGGCACAATGCGAAGAGGCAAATAGCTTCAGAAATGTTCAAATTGTAAAGTCTATTATCCCTATGGATGTGGGGTTCTTTATATC
CAGAGGAGCAAGCACCAAGAATGAGTATGGACTATGGAGTATTGTAGTTCGGGAACAAACGACCACAACGAACACTGTCGCAACCAGAAAAATTGCAGTAGCAACACAGG
AGCATCTGCTTTTCTTCTGGAAACATACAATGGAAGAGAAACCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAA
GAAACCATTGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAACTCTGCAATCCCACATTATGGTCCACCACTCCTTCAACGGCAACAACGGCTACTTCTGGTTT
AACAATTGCCAGCCCAAATGGTCCATCTTCACATTCCACTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTTGCGGAG
GCAGCGGTAGTGGGGGAGCCCTCGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATTG
CTGACTGATCTTCCAATTCTCCATCTAAGTTCATTAGCCAGTGTTTCTCATTTCGAATTTGATTTTTATTTGAGAAGAATCGAGATCGGTTCGGAGATATTGGGTTCCCC
CATGGCAAAAGCGTATGAATCGAGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGG
TTAAGAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

mRNA sequence

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Protein sequence

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MATDHIPQMAQCEEANSFRNVQIVKSIIPMDVGFFISRGASTKNEYGLWSIVVREQTTTTNTVATRKIAVATQEHLLFFWKHTMEEKPTNVLALPQTTQELAMEGIKHLE
ETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKL
LTDLPILHLSSLASVSHFEFDFYLRRIEIGSEILGSPMAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

HG10008770 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome