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HG10008818 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008818
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease H
Genome locationChr06:19845..27611
RNA-Seq ExpressionHG10008818
SyntenyHG10008818
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012436090.1 PREDICTED: uncharacterized protein LOC105762750 [Gossypium raimondii]9.6e-3488.04Show/hide
Query:  TDGTFALKEISLAPYQFLVLKLCYEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKEMFDML
        TDGTFALKEISLAPYQ LV KLC EIDVELTHVNR TNRHADSLATLASKIKFEDD   + IKISKRRTPAHGTLTISYMKMSLKKE+ DML
Subjt:  TDGTFALKEISLAPYQFLVLKLCYEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKEMFDML

XP_026398957.1 uncharacterized protein LOC113294795 [Papaver somniferum]1.1e-0550.7Show/hide
Query:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPA
        +G +ALKE++LAPY+    KL  Y  +  +THV RS NRHAD L TLASK++FE    L      KRRT A
Subjt:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPA

XP_026447898.1 uncharacterized protein LOC113348378 [Papaver somniferum]5.0e-0651.28Show/hide
Query:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTIS
        +G +ALKE++LAPY+    KL  Y  D   THV RS NRHAD LATLASK++FE    L      KRRT A   L+ S
Subjt:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTIS

XP_026451688.1 uncharacterized protein LOC113352019 [Papaver somniferum]1.1e-0547.44Show/hide
Query:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTIS
        +G +ALKE++L+PY+    KL  Y  D  +THV RS N+H D LATLASK++FE    L      KRRT A   L+ S
Subjt:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTIS

XP_026458865.1 uncharacterized protein LOC113359453 [Papaver somniferum]1.4e-0550.7Show/hide
Query:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPA
        +G ++LKE+SLAPY+    KL  Y  D  +TH+ R+ N+HAD LATLASK +FE    L    I KRRT A
Subjt:  DGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPA

TrEMBL top hitse value%identityAlignment
A0A2N9ELC6 Ribonuclease H5.9e-0543.18Show/hide
Query:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKE
        T G F+LKE SLAPY+ L  KL    D  E++H  R  N +AD+LATL S+I FE+  K++ + I+KR TP    L   + +  L  E
Subjt:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKE

A0A2N9G4R0 Reverse transcriptase1.0e-0442.05Show/hide
Query:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKE
        T G FALKE SLAPY+ L  +L  +    E+TH  RS NR+AD+LATL S++ FE     + + I+KR       L   Y +  L +E
Subjt:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKE

A0A2N9HGY4 Reverse transcriptase1.7e-0450.7Show/hide
Query:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTP
        T G F LKE SLAPY+ L  KL  + D  E++H  R  NR+AD+LATL S I FE   K+  + I+KR TP
Subjt:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTP

A0A2N9HW79 Ribonuclease H1.7e-0450.7Show/hide
Query:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTP
        T G F LKE SLAPY+ L  KL  + D  E++H  R  NR+AD+LATL S I FE   K+  + I+KR TP
Subjt:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTP

A0A2N9IBU5 Ribonuclease H5.9e-0543.18Show/hide
Query:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKE
        T G F+LKE SLAPY+ L  KL    D  E++H  R  N +AD+LATL S+I FE+  K++ + I+KR TP    L   + +  L  E
Subjt:  TDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGTAATTCGAAAGGGATCTGGGGTATGACTCGAAAGCTTTACCCGCCTGCTGTCCCAACAGATGGGACATTCGCACTGAAGGAGATTTCCCTAGCACCTTATCA
GTTCCTTGTGCTGAAGCTGTGTTATGAAATTGATGTGGAATTAACCCATGTCAACAGGTCTACCAATCGACATGCTGATTCTTTGGCCACTCTAGCTTCAAAGATCAAGT
TCGAAGATGATATGAAGCTGTCATTCATTAAGATCAGCAAGCGACGAACTCCAGCTCATGGAACTTTAACGATAAGCTATATGAAGATGTCATTAAAGAAGGAGATGTTC
GACATGCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAGTAATTCGAAAGGGATCTGGGGTATGACTCGAAAGCTTTACCCGCCTGCTGTCCCAACAGATGGGACATTCGCACTGAAGGAGATTTCCCTAGCACCTTATCA
GTTCCTTGTGCTGAAGCTGTGTTATGAAATTGATGTGGAATTAACCCATGTCAACAGGTCTACCAATCGACATGCTGATTCTTTGGCCACTCTAGCTTCAAAGATCAAGT
TCGAAGATGATATGAAGCTGTCATTCATTAAGATCAGCAAGCGACGAACTCCAGCTCATGGAACTTTAACGATAAGCTATATGAAGATGTCATTAAAGAAGGAGATGTTC
GACATGCTGTGA
Protein sequenceShow/hide protein sequence
MSSNSKGIWGMTRKLYPPAVPTDGTFALKEISLAPYQFLVLKLCYEIDVELTHVNRSTNRHADSLATLASKIKFEDDMKLSFIKISKRRTPAHGTLTISYMKMSLKKEMF
DML