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HG10008823 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008823
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationChr06:80396..80743
RNA-Seq ExpressionHG10008823
SyntenyHG10008823
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM89651.1 ribosomal protein S11 [Lagenaria siceraria]3.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

YP_004841816.1 ribosomal protein S11 [Cucumis melo subsp. melo]3.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

YP_009751771.1 ribosomal protein S11 [Herpetospermum pedunculosum]3.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

YP_009752276.1 ribosomal protein S11 [Trichosanthes baviensis]5.0e-5499.13Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKG+IHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

YP_009753122.1 ribosomal protein S11 [Corallocarpus boehmii]3.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

TrEMBL top hitse value%identityAlignment
A0A1P8LFS2 Ribosomal protein S111.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

A0A1S4EU37 30S ribosomal protein S11, chloroplastic1.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

A0A249RZ89 30S ribosomal protein S11, chloroplastic1.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

A0A410HFC3 30S ribosomal protein S11, chloroplastic1.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

A0A6M3RVL4 30S ribosomal protein S11, chloroplastic1.8e-54100Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic6.1e-5595.65Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

Q0G9S9 30S ribosomal protein S11, chloroplastic2.3e-5494.78Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAK IPRIGSR+NGRI SRK+TRRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

Q0ZIY6 30S ribosomal protein S11, chloroplastic4.7e-5595.65Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRI SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

Q2L937 30S ribosomal protein S11, chloroplastic6.1e-5595.65Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

Q4VZK2 30S ribosomal protein S11, chloroplastic1.5e-5699.13Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL

Arabidopsis top hitse value%identityAlignment
AT2G36160.1 Ribosomal protein S11 family protein3.2e-0635.42Show/hide
Query:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGI
        GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RSG+
Subjt:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGI

AT3G11510.1 Ribosomal protein S11 family protein3.2e-0635.42Show/hide
Query:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGI
        GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RSG+
Subjt:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGI

AT3G52580.1 Ribosomal protein S11 family protein2.4e-0636.46Show/hide
Query:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGI
        GV+HV ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RSG+
Subjt:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGI

ATCG00750.1 ribosomal protein S111.3e-5292.17Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRSGIL
        GRDAALRAIRRSGIL
Subjt:  GRDAALRAIRRSGIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAA
CAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAA
CCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGT
AGAAGCGGTATACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAA
CAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAA
CCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGT
AGAAGCGGTATACTATGA
Protein sequenceShow/hide protein sequence
MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIR
RSGIL