CuGenDBv2

Gene ID	HG10008829
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Chr06:101732..102193
RNA-Seq Expression	HG10008829
Synteny	HG10008829
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM89028.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.0e-78

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.0e-78

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

AHM90682.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.0e-78

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

1.0e-78

96.18

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

1.0e-78

96.18

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LDX8 DNA-directed RNA polymerase subunit beta

4.9e-79

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

A0A2Z2CGF9 DNA-directed RNA polymerase subunit beta

4.9e-79

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

4.9e-79

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

A0A6M3RVI4 DNA-directed RNA polymerase subunit beta

4.9e-79

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

X2F5U4 DNA-directed RNA polymerase subunit beta

4.9e-79

96.18

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

SwissProt top hits

e value

%identity

Alignment

Q09X25 DNA-directed RNA polymerase subunit beta

9.9e-77

91.08

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        ML GGNE +STIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKT RDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

Q0ZJ28 DNA-directed RNA polymerase subunit beta

1.3e-76

91.08

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        M  GGNE MSTIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKT RDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVI+QILQSPGIYYRSELDHNGISVYTGTI+SDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

Q49L06 DNA-directed RNA polymerase subunit beta

7.6e-77

91.08

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLG GNE MSTIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKT RDM+EQT+F
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

Q4VZP1 DNA-directed RNA polymerase subunit beta

6.6e-81

95.54

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLGGGNERMSTIP FNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

Q8S8X9 DNA-directed RNA polymerase subunit beta

4.9e-76

90.45

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLG GNE +STIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWK  RDM+EQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

1.1e-70

84.71

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF
        MLG   E  S IPGFNQIQFEGF RFID GL EEL+KFPKIED D EIEFQLFV    +VEPLIKERDAVYESLTYSSELYVSAGLIWKT R+M+EQ IF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFV----VVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYY+SELDHNGISVYTGTIISDWGGR
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTGGGGGTGGAAATGAGAGAATGTCTACAATACCTGGGTTTAATCAGATACAATTTGAAGGTTTTTGTAGGTTCATTGATCATGGCTTAACAGAAGAACTTTCTAA
GTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTGATAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTT
CTGAATTATACGTATCCGCAGGATTAATTTGGAAAACCCGTAGGGATATGAAAGAACAAACCATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATA
GTAAATGGACTATACAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAAT
ATCTGATTGGGGAGGAAGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVVVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMKEQTIFIGNIPLMNSLGTSI
VNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR

HG10008829 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome